Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51267 Brassica carinata HOM05D012071 ORTHO05D013970 1.9e-28 129.0 97 100.0
C01p14990 Brassica napus HOM05D012071 ORTHO05D013970 2.0e-25 119.0 97 70.1
BcaNung04703 Brassica carinata HOM05D012071 ORTHO05D013970 2.4e-23 112.1 97 84.5
Sp7g19100 Schrenkiella parvula HOM05D012071 ORTHO05D013970 4.2e-23 111.3 97 88.7
BolC1t01447H Brassica oleracea HOM05D000777 ORTHO05D000595 9.6e-20 100.1 85 95.3
C07p51060 Brassica napus HOM05D012071 ORTHO05D013970 2.8e-19 98.6 83 86.7
BraA03t14336Z Brassica rapa HOM05D012071 ORTHO05D013970 2.8e-19 98.6 83 91.6
Carub.0007s2040 Capsella rubella HOM05D012071 ORTHO05D013970 3.7e-19 98.2 100 85.0
A03p52620 Brassica napus HOM05D012071 ORTHO05D013970 4.8e-19 97.8 83 94.0
BolC7t45606H Brassica oleracea HOM05D012071 ORTHO05D013970 1.8e-18 95.9 83 84.3
Thhalv10026664m.g Eutrema salsugineum HOM05D012071 ORTHO05D013970 4.0e-18 94.7 97 86.6
A01p12410 Brassica napus HOM05D000777 ORTHO05D000595 9.0e-18 93.6 46 100.0
BraA01t01187Z Brassica rapa HOM05D000777 ORTHO05D000595 9.0e-18 93.6 46 100.0
AL7G33090 Arabidopsis lyrata HOM05D012071 ORTHO05D013970 1.9e-15 85.9 46 91.3
CARHR227630 Cardamine hirsuta HOM05D012071 ORTHO05D013970 1.9e-15 85.9 46 91.3
AT4G21060 Arabidopsis thaliana HOM05D000777 ORTHO05D000595 9.3e-15 83.6 46 91.3
Aa31LG6G3080 Aethionema arabicum HOM05D012071 ORTHO05D013970 1.5e-12 76.3 42 90.5
A08p15420 Brassica napus HOM05D012071 ORTHO05D013970 2.8e-11 72.0 43 83.7
BcaB03g11702 Brassica carinata HOM05D012071 ORTHO05D013970 3.2e-07 58.5 45 71.1
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 79.5
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 79.5
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 79.5
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 79.5
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 79.5
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 79.5
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 7.2e-07 57.4 39 79.5
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.6e-06 56.2 97 53.6
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.6e-06 56.2 94 39.4
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 2.1e-06 55.8 97 41.2
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 2.1e-06 55.8 39 76.9
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 2.1e-06 55.8 39 76.9
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 2.1e-06 55.8 39 76.9
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 2.7e-06 55.5 39 74.4
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 3.6e-06 55.1 46 69.6
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 4.6e-06 54.7 39 76.9
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 4.6e-06 54.7 39 76.9
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 4.6e-06 54.7 39 76.9
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 4.6e-06 54.7 39 76.9
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 4.6e-06 54.7 39 76.9
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 6.1e-06 54.3 100 44.0
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.1e-06 54.3 39 76.9
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 7.9e-06 53.9 97 38.1
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 7.9e-06 53.9 39 76.9


User provided reference genes

Program Settings