Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-221 772.7 398 100.0
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 8.9e-221 770.0 398 99.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.9e-219 765.0 398 99.2
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-213 745.7 400 97.2
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.7e-211 739.2 398 97.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 6.4e-203 710.7 401 93.8
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.1e-190 669.1 400 87.8
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.0e-188 662.5 404 86.1
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.5e-183 646.4 404 84.2
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 5.6e-183 644.4 405 84.0
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 6.9e-181 637.5 404 83.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.9e-179 631.3 403 82.9
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-170 603.2 403 79.9
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.5e-147 524.6 400 69.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 7.5e-127 458.0 399 63.2
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 6.3e-126 454.9 406 62.3
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 2.4e-125 453.0 373 65.7
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.5e-124 449.1 367 66.8
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.5e-124 449.1 370 64.1
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 7.7e-124 448.0 395 61.8
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.0e-123 447.6 397 60.2
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.3e-123 447.2 383 63.7
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.2e-123 446.4 391 61.4
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.9e-123 446.0 377 62.9
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.5e-122 443.0 394 61.2
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.2e-122 442.6 392 62.2
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 3.2e-122 442.6 385 61.0
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 7.2e-122 441.4 365 63.8
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 2.1e-121 439.9 352 63.6
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.6e-121 439.1 378 63.2
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 4.7e-121 438.7 406 60.1
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 8.0e-121 438.0 397 61.0
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.0e-120 437.6 369 62.9
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.0e-120 436.0 387 61.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.0e-120 436.0 353 65.2
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 3.0e-120 436.0 358 64.0
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 4.0e-120 435.6 369 62.9
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 5.2e-120 435.3 373 63.8
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.5e-119 433.7 352 63.6
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.0e-119 433.3 365 63.0
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.6e-119 433.0 371 62.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.6e-119 433.0 385 60.3
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 4.4e-119 432.2 387 62.0
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 4.4e-119 432.2 363 63.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 4.4e-119 432.2 365 62.7
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 5.7e-119 431.8 394 59.6
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 5.7e-119 431.8 366 62.0
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 7.5e-119 431.4 389 60.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 7.5e-119 431.4 385 60.3
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.2e-118 429.9 366 61.5
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 2.2e-118 429.9 365 61.9
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.2e-118 429.9 365 63.8
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 2.8e-118 429.5 414 58.2
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.7e-118 429.1 362 63.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.7e-118 429.1 362 63.0
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.7e-118 429.1 356 62.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 6.3e-118 428.3 374 61.5
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 6.3e-118 428.3 353 64.0
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.1e-117 427.6 412 57.0
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.4e-117 427.2 390 60.5
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.4e-117 427.2 434 57.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.8e-117 426.8 398 59.8
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.1e-117 426.0 417 57.1
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 3.1e-117 426.0 353 62.9
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.1e-117 425.6 394 58.9
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 5.4e-117 425.2 368 62.2
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 7.0e-117 424.9 393 59.5
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 7.0e-117 424.9 364 62.1
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.0e-116 423.3 350 63.1
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 5.9e-116 421.8 411 56.4
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.9e-115 419.5 369 62.3
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 5.0e-115 418.7 377 60.5
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 5.0e-115 418.7 411 57.7
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 6.6e-115 418.3 358 62.8
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.1e-114 417.5 394 57.6
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.9e-114 416.8 358 61.7
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.5e-114 416.4 404 55.7
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 4.2e-114 415.6 394 58.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 5.5e-114 415.2 365 59.7
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 7.2e-114 414.8 380 58.4
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 7.2e-114 414.8 391 58.3
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 9.5e-114 414.5 384 57.6
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.1e-113 413.3 391 58.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.8e-113 412.9 359 60.4
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.6e-113 412.5 369 59.3
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.0e-112 411.0 370 61.1
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.8e-112 410.2 329 65.0
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.3e-112 409.8 409 54.8
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.3e-112 409.8 287 72.5
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.8e-112 408.3 367 61.0
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-111 407.5 287 72.5
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 4.4e-111 405.6 370 60.3
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.2e-110 403.3 400 54.2
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.8e-109 400.2 393 58.3
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 7.0e-109 398.3 360 59.4
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 3.5e-108 396.0 287 69.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 4.5e-108 395.6 355 60.3
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 7.8e-108 394.8 355 60.6
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 7.8e-108 394.8 358 58.4
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.7e-107 393.7 351 60.1
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.7e-107 393.7 380 56.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 5.0e-107 392.1 384 58.3
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 8.6e-107 391.3 368 59.8
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.1e-106 391.0 370 56.8
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.9e-106 390.2 418 56.2
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.5e-106 389.8 399 54.4
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 5.6e-106 388.7 329 62.3
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 7.3e-106 388.3 379 58.6
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-105 387.5 379 58.3
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-105 386.0 379 58.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 8.0e-105 384.8 356 57.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.0e-104 384.4 362 56.4
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.4e-104 384.0 368 59.2
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.4e-104 384.0 368 59.2
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.4e-104 384.0 366 55.2
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-104 383.6 369 59.3
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.8e-104 383.6 369 59.3
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.1e-104 382.9 358 60.1
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 3.4e-103 379.4 369 58.8
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 7.5e-103 378.3 351 60.1
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 2.2e-102 376.7 392 55.6
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.9e-102 376.3 357 54.9
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.4e-102 375.2 361 57.1
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.4e-101 373.2 356 58.4
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 5.4e-101 372.1 286 67.1
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 6.0e-100 368.6 364 56.9
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.9e-99 365.9 358 57.0
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 4.3e-98 362.5 290 59.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.8e-96 357.1 333 55.9
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 5.2e-96 355.5 364 52.7
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 1.4e-93 347.4 366 55.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.4e-87 326.2 285 61.4
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.8e-87 325.5 282 61.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.3e-86 324.3 390 48.2
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 8.6e-83 311.6 372 47.0
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.1e-82 311.2 251 65.3
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 4.3e-82 309.3 352 51.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.8e-80 302.0 247 61.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.5e-66 256.9 204 63.7
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.8e-56 224.2 291 40.5
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 5.5e-53 212.6 295 40.3
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 3.5e-52 209.9 171 64.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-51 208.0 155 67.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.3e-38 164.9 256 41.4
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.8e-27 127.9 246 37.0
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-23 115.2 189 40.2
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.1e-21 108.6 108 53.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 4.2e-21 106.7 174 40.8
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 6.1e-20 102.8 282 27.7
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 9.7e-18 95.5 117 45.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.5e-15 87.0 69 62.3
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 5.9e-15 86.3 53 75.5
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 2.4e-08 64.3 101 35.6


User provided reference genes

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