Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51223 Brassica carinata HOM05D000325 ORTHO05D091287 1.4e-50 202.6 98 100.0
BcaC01g03378 Brassica carinata HOM05D000325 ORTHO05D000583 6.1e-38 160.6 80 96.2
Sp7g27320 Schrenkiella parvula HOM05D000325 ORTHO05D015252 1.1e-18 96.7 80 66.2
BcaC09g51729 Brassica carinata HOM05D000325 ORTHO05D015252 1.4e-18 96.3 80 68.8
C01p10060 Brassica napus HOM05D000325 ORTHO05D015252 1.4e-18 96.3 80 68.8
C08p03040 Brassica napus HOM05D000325 ORTHO05D000583 3.1e-18 95.1 48 95.8
BolC1t00964H Brassica oleracea HOM05D000325 ORTHO05D015252 5.3e-18 94.4 89 61.8
BcaC04g18766 Brassica carinata HOM05D000325 ORTHO05D039234 9.1e-18 93.6 56 85.7
Thhalv10027451m.g Eutrema salsugineum HOM05D000325 ORTHO05D015252 9.1e-18 93.6 85 61.2
AL7G22950 Arabidopsis lyrata HOM05D000325 ORTHO05D015252 5.9e-17 90.9 90 58.9
A01p08590 Brassica napus HOM05D000325 ORTHO05D015252 5.9e-17 90.9 80 62.5
C09p59450 Brassica napus HOM05D000325 ORTHO05D039234 1.3e-16 89.7 56 82.1
Carub.0007s1110 Capsella rubella HOM05D000325 ORTHO05D015252 1.3e-16 89.7 90 58.9
BraA01t00810Z Brassica rapa HOM05D000325 ORTHO05D015252 2.2e-16 89.0 83 60.2
CARHR237260 Cardamine hirsuta HOM05D000325 ORTHO05D015252 2.2e-16 89.0 81 60.5
Aa31LG2G21000 Aethionema arabicum HOM05D000325 ORTHO05D015252 7.2e-15 84.0 81 58.0
AT4G29440 Arabidopsis thaliana HOM05D000325 ORTHO05D015252 2.1e-14 82.4 86 57.0
Carub.0003s3399 Capsella rubella HOM05D000325 ORTHO05D014391 1.2e-12 76.6 81 50.6
THA.LOC104803987 Tarenaya hassleriana HOM05D000325 ORTHO05D014391 1.5e-12 76.3 78 51.3
AT2G19710 Arabidopsis thaliana HOM05D000325 ORTHO05D014391 5.7e-12 74.3 81 48.1
A07p01030 Brassica napus HOM05D000325 ORTHO05D014391 7.5e-12 73.9 80 55.0
BraA07t27904Z Brassica rapa HOM05D000325 ORTHO05D014391 7.5e-12 73.9 80 55.0
AL3G48530 Arabidopsis lyrata HOM05D000325 ORTHO05D014391 9.8e-12 73.6 81 48.1
Thhalv10001901m.g Eutrema salsugineum HOM05D000325 ORTHO05D014391 9.8e-12 73.6 82 53.7
BcaB03g16752 Brassica carinata HOM05D000325 ORTHO05D014391 3.7e-11 71.6 46 73.9
BcaC06g36610 Brassica carinata HOM05D000325 ORTHO05D014391 3.7e-11 71.6 46 73.9
C07p02190 Brassica napus HOM05D000325 ORTHO05D014391 3.7e-11 71.6 46 73.9
BolC7t40628H Brassica oleracea HOM05D000325 ORTHO05D014391 3.7e-11 71.6 46 73.9
Sp3g33040 Schrenkiella parvula HOM05D000325 ORTHO05D014391 4.8e-11 71.2 46 73.9
BcaC06g34106 Brassica carinata HOM05D000325 ORTHO05D090659 8.3e-11 70.5 34 91.2
CARHR110160 Cardamine hirsuta HOM05D000325 ORTHO05D014391 1.1e-10 70.1 53 66.0
THA.LOC104814600 Tarenaya hassleriana HOM05D000325 ORTHO05D014391 4.1e-10 68.2 78 44.9
BcaC02g10194 Brassica carinata HOM05D003135 ORTHO05D003715 1.2e-09 66.6 80 47.5
Aa31LG8G16680 Aethionema arabicum HOM05D000325 ORTHO05D000583 1.0e-08 63.5 60 53.3
TWI32G0874 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 1.3e-08 63.2 42 69.0
BcaC05g26066 Brassica carinata HOM05D000325 ORTHO05D094652 1.7e-08 62.8 34 85.3
TWI34G1765 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 1.7e-08 62.8 42 71.4
EL10Ac8g19255 Beta vulgaris HOM05D000325 ORTHO05D000583 8.5e-08 60.5 62 54.8
Manes.16G104700 Manihot esculenta HOM05D000325 ORTHO05D000583 1.1e-07 60.1 42 69.0
TPR.G22817 Trifolium pratense HOM05D000325 ORTHO05D000583 1.1e-07 60.1 42 69.0
Ciclev10010570m.g Citrus clementina HOM05D000325 ORTHO05D000583 1.5e-07 59.7 72 51.4
Glyma.01G004100 Glycine max HOM05D000325 ORTHO05D000583 2.5e-07 58.9 44 63.6
Gorai.010G081100 Gossypium raimondii HOM05D000325 ORTHO05D000583 2.5e-07 58.9 42 66.7
Lj2g0002086 Lotus japonicus HOM05D000325 ORTHO05D000583 3.2e-07 58.5 44 63.6
Lj7A671T44 Lonicera japonica HOM05D000325 ORTHO05D000583 5.5e-07 57.8 42 64.3
Phvul.004G172500 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 5.5e-07 57.8 44 61.4
VMungo0464G1401 Vigna mungo HOM05D000325 ORTHO05D000583 5.5e-07 57.8 44 61.4
Glyma.07G127800 Glycine max HOM05D000325 ORTHO05D000583 7.2e-07 57.4 44 61.4
Gohir.A06G070833 Gossypium hirsutum HOM05D000325 ORTHO05D000583 7.2e-07 57.4 42 64.3
Gohir.D06G069532 Gossypium hirsutum HOM05D000325 ORTHO05D000583 7.2e-07 57.4 42 64.3
Sabra06G0118500 Salix brachista HOM05D000325 ORTHO05D000583 7.2e-07 57.4 42 64.3
MD02G1073500 Malus domestica HOM05D000325 ORTHO05D000583 9.4e-07 57.0 42 61.9
Medtr6g091690 Medicago truncatula HOM05D000325 ORTHO05D000583 9.4e-07 57.0 42 64.3
arahy.Tifrunner.gnm1.ann1.4E075G Arachis hypogaea HOM05D000325 ORTHO05D000583 1.2e-06 56.6 41 65.9
arahy.Tifrunner.gnm1.ann1.E9QABH Arachis hypogaea HOM05D000325 ORTHO05D000583 1.2e-06 56.6 41 65.9
Ca_25612_v3 Cicer arietinum L. HOM05D000325 ORTHO05D000583 1.2e-06 56.6 41 65.9
MD15G1202900 Malus domestica HOM05D000325 ORTHO05D000583 1.2e-06 56.6 42 61.9
Prupe.7G214200 Prunus persica HOM05D000325 ORTHO05D000583 1.2e-06 56.6 42 61.9
CiPaw.04G152400 Carya illinoinensis HOM05D000325 ORTHO05D000583 1.6e-06 56.2 48 60.4
RcHm_v2.0_Chr2g0092861 Rosa chinensis HOM05D000325 ORTHO05D000583 1.6e-06 56.2 43 55.8
FvH4_1g06910 Fragaria vesca HOM05D000325 ORTHO05D000583 2.1e-06 55.8 43 55.8
FAN19G0812 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.1e-06 55.8 43 55.8
FAN26G1283 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.1e-06 55.8 43 55.8
FAN26G2118 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.1e-06 55.8 43 55.8
FAN28G2639 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.1e-06 55.8 43 55.8
Potri.006G149800 Populus trichocarpa HOM05D000325 ORTHO05D000583 2.1e-06 55.8 49 57.1
Thecc.09G093700 Theobroma cacao HOM05D000325 ORTHO05D000583 2.1e-06 55.8 42 61.9
FAN23G1144 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.7e-06 55.5 43 55.8
Cpa.g.sc2175.1 Carica papaya HOM05D000325 ORTHO05D000583 3.6e-06 55.1 40 65.0
SGA_v2.0_scaffold62G21578 Striga asiatica HOM05D000325 ORTHO05D000583 3.6e-06 55.1 41 63.4
Cfa003122 Carpinus fangiana HOM05D000325 ORTHO05D000583 4.7e-06 54.7 48 60.4
Haze_25880 Corylus avellana HOM05D000325 ORTHO05D000583 4.7e-06 54.7 48 60.4
Duzib168G1447 Durio zibethinus HOM05D000325 ORTHO05D000583 4.7e-06 54.7 42 59.5
Ah.14g085310 Amaranthus hybridus HOM05D000325 ORTHO05D000583 6.1e-06 54.3 44 63.6
vmacro10818 Vaccinium macrocarpon HOM05D000325 ORTHO05D000583 6.1e-06 54.3 42 61.9
arahy.Tifrunner.gnm1.ann1.Z08FJS Arachis hypogaea HOM05D000325 ORTHO05D000583 8.0e-06 53.9 41 63.4
Psat1g049200 Pisum sativum HOM05D000325 ORTHO05D000583 8.0e-06 53.9 42 61.9
Rhsim05G0034800 Rhododendron simsii HOM05D000325 ORTHO05D000583 8.0e-06 53.9 42 59.5


User provided reference genes

Program Settings