Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 4.2e-54 214.5 117 100.0
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 4.2e-54 214.5 117 100.0
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 4.2e-54 214.5 117 100.0
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 2.2e-50 202.2 118 97.5
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 1.8e-49 199.1 117 94.9
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 4.0e-44 181.4 117 78.6
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.5e-43 179.5 117 76.1
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 4.8e-42 174.5 117 86.3
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 2.3e-39 165.6 121 74.4
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.1e-38 163.3 120 73.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.4e-36 156.4 121 78.5
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.6e-35 152.1 120 72.5
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 1.9e-30 136.0 122 69.7
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.1e-20 103.6 116 49.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.0e-17 90.9 118 44.9
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 3.0e-15 85.5 127 45.7
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 5.1e-15 84.7 122 44.3
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 8.6e-15 84.0 112 45.5
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 3.3e-14 82.0 125 43.2
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.3e-14 81.6 118 41.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 5.6e-14 81.3 116 42.2
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 7.3e-14 80.9 119 40.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.3e-14 80.9 121 41.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 7.3e-14 80.9 121 41.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.5e-14 80.5 121 41.3
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.2e-13 80.1 125 42.4
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.1e-13 79.3 115 41.7
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.2e-13 77.8 111 43.2
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 6.2e-13 77.8 123 41.5
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 6.2e-13 77.8 119 42.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.1e-12 77.0 120 40.0
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-12 76.6 111 40.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.4e-12 76.6 125 41.6
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.4e-12 76.6 114 39.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.4e-12 76.6 118 42.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.8e-12 76.3 111 40.5
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.8e-12 76.3 126 42.1
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.3e-12 75.9 111 40.5
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 3.1e-12 75.5 118 43.2
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 4.0e-12 75.1 117 41.9
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 5.2e-12 74.7 113 39.8
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-11 72.8 111 38.7
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.0e-11 72.8 115 40.9
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.0e-11 72.8 115 42.6
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 2.6e-11 72.4 114 40.4
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.6e-11 72.4 112 42.0
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.6e-11 72.4 119 37.8
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 3.4e-11 72.0 126 41.3
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.4e-11 71.6 120 39.2
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 4.4e-11 71.6 120 39.2
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 7.5e-11 70.9 120 40.8
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 9.9e-11 70.5 131 36.6
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.9e-10 68.2 120 38.3
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 6.4e-10 67.8 116 42.2
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 6.4e-10 67.8 121 37.2
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.4e-09 66.6 128 36.7
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.4e-09 66.6 121 38.8
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.4e-09 65.9 114 36.8
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.4e-09 65.9 114 36.8
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.4e-09 65.9 121 38.0
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 3.2e-09 65.5 128 47.7
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.2e-09 65.5 116 39.7
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.2e-09 65.5 118 37.3
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 4.1e-09 65.1 122 36.1
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 4.1e-09 65.1 110 40.9
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 7.1e-09 64.3 116 41.4
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 9.2e-09 63.9 111 38.7
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 9.2e-09 63.9 111 38.7
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 9.2e-09 63.9 117 36.8
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 9.2e-09 63.9 117 36.8
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.2e-08 63.5 123 40.7
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 1.2e-08 63.5 109 38.5
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 2.1e-08 62.8 118 46.6
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.7e-08 62.4 118 35.6
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.5e-08 62.0 123 39.0
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 6.0e-08 61.2 123 46.3
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 6.0e-08 61.2 118 33.9
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 6.0e-08 61.2 117 35.0
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 6.0e-08 61.2 121 36.4
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.0e-08 61.2 134 43.3
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 7.8e-08 60.8 121 38.0
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 7.8e-08 60.8 112 43.8
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.0e-07 60.5 118 37.3
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.0e-07 60.5 109 38.5
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 2.3e-07 59.3 118 34.7
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 3.0e-07 58.9 118 36.4
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 3.0e-07 58.9 113 34.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 8.6e-07 57.4 116 36.2
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.1e-06 57.0 111 32.4
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.1e-06 57.0 111 32.4
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.1e-06 57.0 111 33.3
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.9e-06 56.2 125 48.8
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.5e-06 55.8 116 38.8
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.5e-06 55.8 121 33.9
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 4.3e-06 55.1 122 34.4
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 4.3e-06 55.1 122 41.0
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 4.3e-06 55.1 112 35.7
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 5.6e-06 54.7 123 44.7
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 5.6e-06 54.7 118 33.1
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.3e-06 54.3 120 33.3
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.5e-06 53.9 120 36.7
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.5e-06 53.9 120 36.7


User provided reference genes

Program Settings