Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 2517.3 1336 100.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 2499.9 1362 98.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 2465.6 1354 97.6
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 2260.0 1346 90.0
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 2238.4 1364 88.8
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 2199.9 1341 87.8
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 2036.2 1340 81.6
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1963.7 1341 79.8
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1936.8 1339 79.1
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1827.0 1338 76.3
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 0.0e+00 1757.3 1343 72.2
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 0.0e+00 1692.2 1178 78.6
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 0.0e+00 1597.0 1392 66.2
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1496.9 1454 60.8
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1200.7 1456 51.0
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1189.9 1430 51.8
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1182.5 1378 49.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1176.0 1542 47.7
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1164.1 1520 47.0
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1162.9 1522 47.0
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1161.4 1389 49.9
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1158.7 1414 48.4
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1158.7 1354 50.7
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1157.9 1335 52.5
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1152.1 1402 50.1
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1147.1 1449 49.7
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1142.9 1380 51.0
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1142.5 1537 47.2
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1134.8 1550 45.9
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1131.7 1343 50.3
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1125.9 1343 50.6
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1112.4 1449 48.4
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1105.5 1559 45.5
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1105.1 1395 50.7
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1103.2 1399 49.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1102.4 1418 47.9
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1100.5 1421 49.8
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1093.2 1396 48.9
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1090.5 1501 44.8
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1088.2 1406 47.8
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1076.6 1367 48.3
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 4.6e-311 1071.6 1396 49.1
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 4.0e-310 1068.5 1473 45.1
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 4.0e-310 1068.5 1403 47.3
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.3e-308 1063.5 1383 47.1
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 1.7e-308 1063.1 1450 45.9
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 6.5e-308 1061.2 1385 47.3
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 1.9e-307 1059.7 1510 44.6
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.9e-307 1059.7 1449 46.9
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 4.2e-307 1058.5 1372 46.2
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 2.7e-306 1055.8 1507 44.6
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 4.6e-306 1055.0 1418 46.9
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 2.3e-305 1052.7 1339 48.5
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 1.1e-302 1043.9 1559 43.3
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 2.6e-301 1039.3 1384 47.0
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 3.4e-301 1038.9 1390 47.0
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 1.4e-299 1033.5 1399 47.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.6e-298 1030.0 1402 47.4
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 6.7e-297 1024.6 1549 42.6
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 1.3e-295 1020.4 1442 44.2
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 8.2e-295 1017.7 1531 43.2
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 1.4e-294 1016.9 1483 44.6
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.4e-294 1016.9 1553 44.1
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 2.4e-294 1016.1 1369 45.7
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 5.3e-294 1015.0 1502 44.9
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 2.0e-293 1013.1 1511 44.3
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 5.9e-293 1011.5 1515 43.9
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 8.5e-292 1007.7 1513 43.2
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.1e-286 990.7 1798 38.6
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 2.0e-285 986.5 1337 47.7
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 5.9e-285 984.9 1595 41.2
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 1.1e-283 980.7 1436 44.5
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.4e-280 968.8 1359 46.1
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 3.7e-279 965.7 1560 41.8
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 3.2e-275 952.6 1477 44.2
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 2.0e-272 943.3 937 56.2
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 4.0e-265 919.1 1376 43.9
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.2e-261 907.5 1341 43.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 5.0e-260 902.1 1338 44.4
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.0e-260 902.1 1369 45.4
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 6.6e-260 901.7 967 53.5
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.5e-259 899.8 1336 44.3
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 6.8e-257 891.7 1508 39.9
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.7e-255 887.1 1465 43.1
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.0e-244 849.0 764 60.1
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.9e-243 847.0 1397 42.1
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 1.7e-239 833.9 991 49.0
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 8.6e-228 795.0 1391 41.0
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 2.7e-221 773.5 1345 40.7
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.0e-208 730.7 1297 39.9
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.4e-201 707.2 1271 40.2
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 6.9e-201 705.7 803 50.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 2.8e-194 683.7 1345 35.6
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.3e-191 674.9 2356 28.0
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.4e-185 654.1 1134 38.9
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 4.5e-176 623.2 546 61.5
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 1.5e-171 608.2 1499 32.3
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.1e-169 600.5 1321 35.4
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.6e-157 561.6 708 45.5
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 2.3e-156 557.8 839 44.0
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.4e-153 548.5 890 40.0
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.4e-137 494.6 1354 30.8
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 5.4e-129 466.8 1176 35.5
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 8.9e-124 449.5 426 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 9.6e-110 402.9 1401 27.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 6.0e-104 383.6 554 42.1
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.6e-101 375.6 1572 25.3
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.6e-99 368.2 500 41.6
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 5.8e-99 367.1 503 41.2
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 2.4e-92 345.1 1458 27.2
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.2e-89 334.7 342 56.7
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.3e-87 328.6 497 45.3
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.6e-86 323.9 466 45.7
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.0e-80 303.9 290 51.7
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 3.4e-75 288.1 323 52.9
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 5.3e-68 264.2 347 45.2
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.2e-58 232.3 210 61.4
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.3e-55 222.2 235 52.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.3e-52 211.1 150 70.7
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.5e-50 203.8 746 26.3
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.1e-44 185.3 421 43.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-43 183.3 284 41.9
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 7.7e-43 180.6 102 92.2
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-42 177.2 693 24.8
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 5.5e-41 174.5 151 63.6
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.7e-40 172.2 551 26.7
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 7.5e-38 164.1 126 68.3
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 3.3e-33 148.7 347 30.8
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 7.2e-33 147.5 153 54.2
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.0e-31 141.7 214 41.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.8e-27 127.5 648 24.8
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.1e-25 123.6 359 27.3
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.6e-24 119.8 102 60.8
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 7.8e-19 100.9 181 37.6
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.3e-18 100.1 74 63.5
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 2.7e-11 75.9 242 26.9
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.6e-11 75.1 48 75.0
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.3e-10 72.8 231 27.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 3.0e-10 72.4 68 55.9
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.6e-08 66.6 56 60.7
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.6e-08 65.5 77 51.9
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 6.2e-08 64.7 52 63.5
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 9.9e-06 57.4 179 26.3


User provided reference genes

Program Settings