Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 4.1e-57 224.6 118 100.0
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 4.1e-57 224.6 118 100.0
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 4.1e-57 224.6 118 100.0
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 1.7e-55 219.2 118 97.5
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 1.4e-52 209.5 118 91.5
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.7e-47 192.6 118 82.2
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.9e-42 175.3 119 79.0
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 1.1e-41 173.3 120 76.7
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.2e-40 169.9 118 75.4
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 7.8e-40 167.2 118 73.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.3e-23 112.5 127 55.9
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 3.9e-23 111.7 127 55.1
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.6e-23 110.9 79 70.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.9e-22 109.4 123 55.3
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.5e-22 109.0 125 55.2
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.3e-22 108.6 123 53.7
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 6.2e-21 104.4 119 55.5
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 6.2e-21 104.4 119 55.5
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 1.1e-20 103.6 118 55.9
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.1e-20 103.6 119 54.6
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.1e-20 103.6 119 54.6
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 1.3e-18 96.7 132 50.8
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 3.2e-17 92.0 118 47.5
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 3.2e-17 92.0 124 48.4
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 3.2e-17 92.0 124 48.4
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 1.6e-16 89.7 118 45.8
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.6e-16 89.7 118 45.8
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.6e-16 89.7 118 45.8
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.1e-15 84.7 120 45.8
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 5.3e-12 74.7 118 40.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.3e-10 70.1 120 40.8
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.7e-10 69.7 119 39.5
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 3.8e-10 68.6 93 47.3
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.8e-10 68.6 104 43.3
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.8e-10 68.6 119 39.5
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.1e-09 67.0 118 38.1
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-09 67.0 104 42.3
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.1e-09 67.0 123 38.2
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.4e-09 66.6 116 41.4
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.4e-09 66.6 109 38.5
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.4e-09 66.6 121 40.5
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.9e-09 66.2 78 46.2
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.4e-09 65.9 121 40.5
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 3.2e-09 65.5 119 36.1
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 3.2e-09 65.5 119 38.7
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 3.2e-09 65.5 118 37.3
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.2e-09 65.5 104 42.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 4.2e-09 65.1 108 38.9
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 5.5e-09 64.7 116 39.7
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.5e-09 64.7 119 37.8
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 5.5e-09 64.7 78 44.9
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 7.1e-09 64.3 119 39.5
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 9.3e-09 63.9 104 43.3
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 9.3e-09 63.9 117 37.6
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.2e-08 63.5 119 35.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.2e-08 63.5 119 35.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.6e-08 63.2 121 38.8
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 3.5e-08 62.0 121 38.0
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 3.5e-08 62.0 119 37.8
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 3.5e-08 62.0 103 37.9
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 4.6e-08 61.6 119 37.0
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 4.6e-08 61.6 82 47.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 6.0e-08 61.2 103 40.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.0e-08 61.2 106 36.8
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 7.9e-08 60.8 122 36.9
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.0e-07 60.5 119 36.1
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.0e-07 60.5 119 36.1
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.0e-07 60.5 76 44.7
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-07 60.1 119 34.5
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-07 60.1 121 33.9
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.3e-07 60.1 121 33.9
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-07 60.1 75 44.0
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-07 59.7 119 34.5
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-07 59.7 119 34.5
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.8e-07 59.7 119 34.5
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.8e-07 59.7 83 39.8
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.3e-07 59.3 75 46.7
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.3e-07 59.3 76 44.7
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.3e-07 59.3 75 46.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.3e-07 59.3 119 37.0
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 3.0e-07 58.9 121 33.9
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.0e-07 58.9 76 46.1
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.0e-07 58.9 98 41.8
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.0e-07 58.9 98 40.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.0e-07 58.9 81 42.0
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 3.9e-07 58.5 72 45.8
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.9e-07 58.5 80 42.5
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-07 58.5 80 41.2
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 5.1e-07 58.2 119 32.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 5.1e-07 58.2 119 33.6
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 5.1e-07 58.2 75 45.3
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.1e-07 58.2 105 39.0
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 6.7e-07 57.8 78 46.2
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.7e-07 57.8 75 46.7
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 6.7e-07 57.8 77 44.2
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 8.7e-07 57.4 78 42.3
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 8.7e-07 57.4 78 44.9
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.7e-07 57.4 80 40.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.7e-07 57.4 80 40.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 8.7e-07 57.4 89 38.2
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-06 57.0 120 35.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.1e-06 57.0 80 41.2
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.1e-06 57.0 79 43.0
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.5e-06 56.6 66 50.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.5e-06 56.6 100 39.0
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.5e-06 56.6 94 42.6
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.9e-06 56.2 121 33.1
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.9e-06 56.2 117 34.2
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.5e-06 55.8 119 34.5
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.5e-06 55.8 80 41.2
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 3.3e-06 55.5 114 34.2
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 4.3e-06 55.1 117 31.6
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.6e-06 54.7 76 44.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.6e-06 54.7 73 41.1
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 5.6e-06 54.7 78 43.6
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 7.4e-06 54.3 80 35.0
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 7.4e-06 54.3 119 33.6
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 7.4e-06 54.3 80 41.2
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.4e-06 54.3 78 37.2
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 7.4e-06 54.3 77 44.2
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.6e-06 53.9 70 50.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 9.6e-06 53.9 76 39.5
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 9.6e-06 53.9 73 42.5
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 9.6e-06 53.9 70 45.7
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 9.6e-06 53.9 70 45.7
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.6e-06 53.9 109 36.7


User provided reference genes

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