Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51055 Brassica carinata HOM05D002212 ORTHO05D002229 1.8e-105 386.0 199 100.0
BolC1t01686H Brassica oleracea HOM05D002212 ORTHO05D002229 6.0e-85 317.8 199 85.4
C01p17460 Brassica napus HOM05D002212 ORTHO05D002229 3.1e-73 278.9 199 78.9
C03p51820 Brassica napus HOM05D002212 ORTHO05D002229 1.0e-63 247.3 199 71.4
BcaC01g02917 Brassica carinata HOM05D002212 ORTHO05D002229 5.2e-28 128.6 140 60.7
C03p58410 Brassica napus HOM05D002212 ORTHO05D002229 5.2e-28 128.6 140 60.7
BolC3t18099H Brassica oleracea HOM05D002212 ORTHO05D002229 2.2e-26 123.2 138 58.7
A06p33960 Brassica napus HOM05D002212 ORTHO05D002229 8.3e-26 121.3 122 63.1
BraA06t26329Z Brassica rapa HOM05D002212 ORTHO05D002229 1.6e-24 117.1 122 60.7
BcaB08g34734 Brassica carinata HOM05D002212 ORTHO05D002229 2.0e-24 116.7 124 62.1
C09p13390 Brassica napus HOM05D002212 ORTHO05D002229 1.5e-22 110.5 123 56.9
BcaC04g22973 Brassica carinata HOM05D002212 ORTHO05D002229 1.6e-21 107.1 123 56.1
BolC9t54230H Brassica oleracea HOM05D002212 ORTHO05D002229 1.6e-21 107.1 123 56.1
BcaB07g31729 Brassica carinata HOM05D002212 ORTHO05D002229 8.9e-20 101.3 125 54.4
BraA09t36776Z Brassica rapa HOM05D002212 ORTHO05D002229 1.7e-18 97.1 122 53.3
Sp3g30780 Schrenkiella parvula HOM05D002212 ORTHO05D002229 1.7e-18 97.1 131 49.6
Thhalv10022639m.g Eutrema salsugineum HOM05D002212 ORTHO05D002229 3.7e-18 95.9 124 52.4
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 6.4e-18 95.1 87 63.2
BcaC05g27361 Brassica carinata HOM05D002212 ORTHO05D002229 1.1e-17 94.4 105 56.2
Thhalv10024838m.g Eutrema salsugineum HOM05D002212 ORTHO05D002229 4.6e-16 89.0 120 50.0
AL7G15700 Arabidopsis lyrata HOM05D002212 ORTHO05D002229 7.8e-16 88.2 124 47.6
AT4G35470 Arabidopsis thaliana HOM05D002212 ORTHO05D002229 5.0e-15 85.5 123 46.3
CARHR107610 Cardamine hirsuta HOM05D002212 ORTHO05D002229 5.0e-15 85.5 124 47.6
Carub.0007s0486 Capsella rubella HOM05D002212 ORTHO05D002229 1.9e-14 83.6 130 43.8
A09p11370 Brassica napus HOM05D002212 ORTHO05D002229 2.5e-14 83.2 122 50.0
Carub.0003s3148 Capsella rubella HOM05D002212 ORTHO05D002229 2.1e-13 80.1 125 44.8
THA.LOC104819706 Tarenaya hassleriana HOM05D002212 ORTHO05D002229 2.8e-13 79.7 125 44.8
Aa31LG6G12440 Aethionema arabicum HOM05D002212 ORTHO05D002229 1.1e-12 77.8 119 42.0
Sp7g33240 Schrenkiella parvula HOM05D002212 ORTHO05D002229 1.1e-12 77.8 125 44.0
AL3G50310 Arabidopsis lyrata HOM05D002212 ORTHO05D002229 4.0e-12 75.9 123 44.7
BcaNung03630 Brassica carinata HOM05D002212 ORTHO05D002229 5.2e-12 75.5 124 41.1
A03p63580 Brassica napus HOM05D002212 ORTHO05D002229 8.9e-12 74.7 113 44.2
BraA03t15428Z Brassica rapa HOM05D002212 ORTHO05D002229 8.9e-12 74.7 113 44.2
AT2G17440 Arabidopsis thaliana HOM05D002212 ORTHO05D002229 1.2e-11 74.3 123 48.0
Haze_03639 Corylus avellana HOM05D002212 ORTHO05D002229 2.9e-10 69.7 124 39.5
Aa31LG8G14750 Aethionema arabicum HOM05D002212 ORTHO05D002229 6.4e-10 68.6 115 39.1
BraA01t00296Z Brassica rapa HOM05D002212 ORTHO05D002229 6.4e-10 68.6 121 39.7
Nitab4.5_0003096g0030 Nicotiana tabacum HOM05D002212 ORTHO05D002229 6.4e-10 68.6 128 37.5
BcaNung02393 Brassica carinata HOM05D002212 ORTHO05D002229 1.1e-09 67.8 113 41.6
C07p61160 Brassica napus HOM05D002212 ORTHO05D002229 1.1e-09 67.8 113 41.6
C01p03470 Brassica napus HOM05D002212 ORTHO05D002229 1.9e-09 67.0 115 39.1
BolC1t00334H Brassica oleracea HOM05D002212 ORTHO05D002229 1.9e-09 67.0 115 39.1
Manes.02G116100 Manihot esculenta HOM05D002212 ORTHO05D002229 2.4e-09 66.6 134 37.3
Glyma.09G196300 Glycine max HOM05D002212 ORTHO05D002229 3.2e-09 66.2 118 40.7
BolC7t46540H Brassica oleracea HOM05D002212 ORTHO05D002229 4.1e-09 65.9 113 40.7
Gohir.A07G172000 Gossypium hirsutum HOM05D002212 ORTHO05D002229 4.1e-09 65.9 93 45.2
Gorai.001G200100 Gossypium raimondii HOM05D002212 ORTHO05D002229 4.1e-09 65.9 93 45.2
A01p03120 Brassica napus HOM05D002212 ORTHO05D002229 5.4e-09 65.5 121 38.8
Gohir.D07G178900 Gossypium hirsutum HOM05D002212 ORTHO05D002229 5.4e-09 65.5 93 45.2
Lj2C504T11 Lonicera japonica HOM05D002212 ORTHO05D002229 7.0e-09 65.1 142 35.9
CiPaw.08G182500 Carya illinoinensis HOM05D002212 ORTHO05D002229 9.2e-09 64.7 120 36.7
Prupe.7G186300 Prunus persica HOM05D002212 ORTHO05D002229 1.6e-08 63.9 99 41.4
Rhsim10G0191600 Rhododendron simsii HOM05D002212 ORTHO05D002229 2.7e-08 63.2 140 32.9
DCAR_014300 Daucus carota HOM05D002212 ORTHO05D002229 3.5e-08 62.8 129 38.8
Thecc.01G002300 Theobroma cacao HOM05D002212 ORTHO05D002229 4.6e-08 62.4 77 46.8
VMungo1215G0534 Vigna mungo HOM05D002212 ORTHO05D002229 4.6e-08 62.4 78 44.9
Glyma.16G112600 Glycine max HOM05D002212 ORTHO05D002229 6.0e-08 62.0 118 40.7
TAR625G1428 Trochodendron aralioides HOM05D002212 ORTHO05D002229 6.0e-08 62.0 131 36.6
Phvul.002G118400 Phaseolus vulgaris HOM05D002212 ORTHO05D002229 7.8e-08 61.6 117 39.3
CiPaw.07G000600 Carya illinoinensis HOM05D002212 ORTHO05D002229 1.0e-07 61.2 123 36.6
MD15G1228200 Malus domestica HOM05D002212 ORTHO05D002229 1.3e-07 60.8 81 46.9
Medtr5g024780 Medicago truncatula HOM05D002212 ORTHO05D002229 1.3e-07 60.8 77 42.9
Ciclev10025268m.g Citrus clementina HOM05D002212 ORTHO05D002229 1.7e-07 60.5 150 32.7
vmacro20609 Vaccinium macrocarpon HOM05D002212 ORTHO05D002229 1.7e-07 60.5 92 42.4
Glyma.01G157000 Glycine max HOM05D002212 ORTHO05D002229 2.3e-07 60.1 143 34.3
Lj2g0008426 Lotus japonicus HOM05D002212 ORTHO05D002229 2.3e-07 60.1 115 36.5
Manes.01G157200 Manihot esculenta HOM05D002212 ORTHO05D002229 2.3e-07 60.1 138 31.9
Potri.007G065000 Populus trichocarpa HOM05D002212 ORTHO05D002229 2.3e-07 60.1 142 29.6
TAR381G1220 Trochodendron aralioides HOM05D002212 ORTHO05D002229 2.3e-07 60.1 82 42.7
CSS0027494 Camellia sinensis var. sinensis HOM05D002212 ORTHO05D002229 3.0e-07 59.7 141 36.9
Dinv28298 Davidia involucrata HOM05D002212 ORTHO05D002229 3.0e-07 59.7 153 32.0
Hma1.2p1_0631F.1_g192310 Hydrangea macrophylla HOM05D002212 ORTHO05D002229 3.0e-07 59.7 136 36.0
Lalb_Chr09g0324841 Lupinus albus HOM05D002212 ORTHO05D002229 3.0e-07 59.7 147 32.0
PGR119G1495 Punica granatum HOM05D002212 ORTHO05D002229 3.0e-07 59.7 146 34.2
MBI04_g33968_MAGBIO Magnolia biondii HOM05D002212 ORTHO05D002229 3.9e-07 59.3 132 33.3
Psat2g147600 Pisum sativum HOM05D002212 ORTHO05D002229 3.9e-07 59.3 81 42.0
Nn5g31041 Nelumbo nucifera HOM05D002212 ORTHO05D002229 5.0e-07 58.9 125 35.2
MSTRG.15605 Avicennia marina HOM05D002212 ORTHO05D002229 6.6e-07 58.5 81 42.0
Cc07_g12150 Coffea canephora HOM05D002212 ORTHO05D002229 6.6e-07 58.5 81 42.0
Lalb_Chr16g0380181 Lupinus albus HOM05D002212 ORTHO05D002229 6.6e-07 58.5 143 35.0
Eucgr.I02205 Eucalyptus grandis HOM05D002212 ORTHO05D002229 8.6e-07 58.2 138 33.3
Atru.chr3.53 Acer truncatum HOM05D002212 ORTHO05D002229 1.1e-06 57.8 81 43.2
arahy.Tifrunner.gnm1.ann1.N938ZP Arachis hypogaea HOM05D002212 ORTHO05D002229 1.1e-06 57.8 83 41.0
arahy.Tifrunner.gnm1.ann1.SZ6KWI Arachis hypogaea HOM05D002212 ORTHO05D002229 1.1e-06 57.8 83 41.0
RcHm_v2.0_Chr2g0096861 Rosa chinensis HOM05D002212 ORTHO05D002229 1.1e-06 57.8 122 36.1
CAN.G1428.4 Capsicum annuum HOM05D002212 ORTHO05D002229 1.5e-06 57.4 88 38.6
Glyma.11G087900 Glycine max HOM05D002212 ORTHO05D002229 1.5e-06 57.4 95 42.1
Lalb_Chr05g0214951 Lupinus albus HOM05D002212 ORTHO05D002229 3.3e-06 56.2 145 31.7
SalBow3G1404 Salvia bowleyana HOM05D002212 ORTHO05D002229 3.3e-06 56.2 139 33.1
SalBow3G2770 Salvia bowleyana HOM05D002212 ORTHO05D002229 3.3e-06 56.2 139 33.1
Ah.02g123150 Amaranthus hybridus HOM05D002212 ORTHO05D002229 4.3e-06 55.8 80 42.5
EL10Ac6g15031 Beta vulgaris HOM05D002212 ORTHO05D002229 4.3e-06 55.8 141 30.5
Ca_24996_v3 Cicer arietinum L. HOM05D002212 ORTHO05D002229 4.3e-06 55.8 83 36.1
Nn6g31649 Nelumbo nucifera HOM05D002212 ORTHO05D002229 4.3e-06 55.8 110 39.1
Potri.005G098600 Populus trichocarpa HOM05D002212 ORTHO05D002229 5.6e-06 55.5 78 38.5
PGSC0003DMG400013644 Solanum tuberosum HOM05D002212 ORTHO05D002229 5.6e-06 55.5 91 37.4
TPR.G33791 Trifolium pratense HOM05D002212 ORTHO05D002229 5.6e-06 55.5 145 32.4
Aqoxy6G01546 Aquilegia oxysepala HOM05D002212 ORTHO05D002229 7.3e-06 55.1 82 40.2
CDE10G1347 Ceratophyllum demersum HOM05D002212 ORTHO05D002229 7.3e-06 55.1 77 39.0
Nitab4.5_0000855g0060 Nicotiana tabacum HOM05D002212 ORTHO05D002229 9.5e-06 54.7 128 33.6


User provided reference genes

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