Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 5.3e-30 133.7 65 100.0
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-29 131.7 64 98.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.6e-29 131.3 64 96.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 4.5e-29 130.6 64 96.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.4e-27 125.6 63 95.2
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-25 119.0 63 90.5
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.8e-25 118.6 63 88.9
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.6e-24 113.6 63 87.3
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 3.7e-23 110.9 63 82.5
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 6.2e-23 110.2 63 84.1
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 6.2e-23 110.2 63 82.5
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-22 109.0 63 82.5
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 3.1e-22 107.8 63 81.0
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 3.1e-22 107.8 63 81.0
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 5.8e-21 103.6 63 81.0
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 7.6e-21 103.2 63 79.4
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.8e-20 100.9 63 77.8
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.4e-19 99.0 62 75.8
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 5.5e-19 97.1 82 62.2
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 7.1e-19 96.7 81 63.0
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 7.1e-19 96.7 81 63.0
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 9.3e-19 96.3 63 73.0
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-18 95.5 63 73.0
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-18 95.5 63 73.0
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.6e-18 95.5 63 73.0
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-18 95.1 63 73.0
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.1e-18 95.1 63 73.0
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 7.9e-18 93.2 61 72.1
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.0e-17 92.8 63 73.0
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.0e-17 92.8 63 71.4
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-17 92.4 63 69.8
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 1.3e-17 92.4 63 71.4
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.8e-17 92.0 61 72.1
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.0e-17 91.3 63 73.0
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 3.0e-17 91.3 61 65.6
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 3.9e-17 90.9 63 71.4
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 3.9e-17 90.9 61 70.5
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 8.7e-17 89.7 63 71.4
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.5e-16 89.0 61 67.2
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 1.9e-16 88.6 61 67.2
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.9e-16 88.6 61 67.2
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 4.3e-16 87.4 61 65.6
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.3e-16 87.4 59 66.1
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.3e-16 87.4 59 66.1
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 5.7e-16 87.0 61 67.2
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 7.4e-16 86.7 63 68.3
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 7.4e-16 86.7 61 65.6
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.6e-15 85.5 61 65.6
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 2.1e-15 85.1 59 64.4
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.8e-15 84.7 63 66.7
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.8e-15 84.7 63 66.7
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 2.8e-15 84.7 63 66.7
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 2.8e-15 84.7 63 66.7
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 3.7e-15 84.3 61 59.0
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 4.8e-15 84.0 61 59.0
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 4.8e-15 84.0 61 60.7
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 8.2e-15 83.2 57 63.2
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 8.2e-15 83.2 61 63.9
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 8.2e-15 83.2 59 64.4
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 8.2e-15 83.2 58 62.1
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.4e-14 82.4 72 62.5
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.4e-14 82.4 61 62.3
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.8e-14 82.0 55 67.3
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.8e-14 82.0 55 67.3
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.8e-14 82.0 59 66.1
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.8e-14 82.0 59 61.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.4e-14 81.6 59 61.0
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 2.4e-14 81.6 61 62.3
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 2.4e-14 81.6 61 60.7
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 2.4e-14 81.6 57 61.4
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.1e-14 81.3 61 59.0
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 3.1e-14 81.3 59 61.0
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.1e-14 80.9 61 59.0
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 4.1e-14 80.9 59 61.0
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 5.3e-14 80.5 62 56.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.9e-14 80.1 61 57.4
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 6.9e-14 80.1 59 59.3
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 6.9e-14 80.1 59 62.7
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 9.0e-14 79.7 61 57.4
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.2e-13 79.3 58 62.1
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.5e-13 79.0 58 62.1
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.5e-13 79.0 58 62.1
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 2.0e-13 78.6 60 56.7
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.0e-13 78.6 63 55.6
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 3.4e-13 77.8 59 55.9
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 3.4e-13 77.8 62 54.8
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.5e-13 77.4 61 57.4
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 4.5e-13 77.4 61 57.4
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.5e-13 77.4 59 57.6
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.5e-13 77.4 59 57.6
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 5.9e-13 77.0 61 55.7
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 5.9e-13 77.0 59 61.0
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 5.9e-13 77.0 59 55.9
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 5.9e-13 77.0 56 60.7
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 7.6e-13 76.6 60 55.0
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.6e-13 76.6 61 59.0
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.6e-13 76.6 62 54.8
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.0e-12 76.3 58 56.9
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.2e-12 75.1 58 55.2
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.2e-12 75.1 56 58.9
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.2e-12 75.1 59 59.3
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.9e-12 74.7 59 57.6
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.9e-12 74.7 62 53.2
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 3.8e-12 74.3 58 56.9
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.8e-12 74.3 61 55.7
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.8e-12 74.3 61 55.7
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.0e-12 73.9 56 57.1
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.0e-12 73.9 59 61.0
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 5.0e-12 73.9 58 56.9
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 5.0e-12 73.9 63 54.0
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 6.5e-12 73.6 58 56.9
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 6.5e-12 73.6 56 55.4
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.4e-12 73.2 61 54.1
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 8.4e-12 73.2 57 57.9
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 8.4e-12 73.2 57 57.9
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.1e-11 72.8 50 62.0
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 1.1e-11 72.8 58 53.4
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.4e-11 72.4 59 55.9
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.4e-11 72.4 59 55.9
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.9e-11 72.0 62 53.2
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.9e-11 72.0 58 56.9
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.9e-11 72.0 57 54.4
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.5e-11 71.6 62 50.0
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 5.5e-11 70.5 61 50.8
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 7.2e-11 70.1 56 55.4
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 7.2e-11 70.1 55 50.9
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 7.2e-11 70.1 62 53.2
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.6e-10 68.9 62 51.6
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.6e-10 68.9 63 52.4
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.6e-10 68.9 61 50.8
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 2.1e-10 68.6 61 50.8
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 2.1e-10 68.6 62 50.0
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.1e-10 68.6 61 54.1
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.7e-10 68.2 58 53.4
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 3.5e-10 67.8 63 47.6
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.6e-10 67.4 58 55.2
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 6.1e-10 67.0 57 52.6
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.3e-09 65.9 57 50.9
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.3e-09 65.1 58 53.4
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.3e-09 65.1 61 49.2
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.3e-09 65.1 56 53.6
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.0e-09 64.7 56 51.8
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.9e-09 64.3 56 53.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 3.9e-09 64.3 61 49.2
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 5.1e-09 63.9 49 57.1
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.1e-08 62.8 56 51.8
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.9e-08 62.0 53 52.8
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.5e-08 61.6 57 49.1
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 5.7e-08 60.5 61 47.5
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.7e-08 59.7 53 52.8
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.1e-06 56.2 56 46.4
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 9.0e-06 53.1 48 47.9


User provided reference genes

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