Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.0e-37 157.5 76 100.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 6.4e-35 150.2 76 97.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 5.4e-34 147.1 73 97.3
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 2.7e-33 144.8 71 97.2
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.5e-33 144.4 76 93.4
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.0e-32 140.6 76 90.8
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-31 139.4 74 93.2
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.1e-31 139.4 74 93.2
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-31 139.0 77 92.2
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-30 136.0 77 89.6
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 9.8e-28 126.3 78 84.6
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.3e-27 125.9 78 80.8
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.2e-27 125.2 76 82.9
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.7e-27 124.4 78 82.1
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-27 124.4 71 87.3
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 3.7e-27 124.4 71 87.3
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.3e-23 110.9 76 77.6
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 5.6e-23 110.5 76 73.7
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.1e-21 104.8 86 66.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.9e-18 95.5 81 60.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.9e-18 95.5 81 60.5
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.2e-18 94.7 81 60.5
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.6e-17 92.4 81 61.7
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.5e-17 91.3 81 58.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 6.0e-17 90.5 81 58.0
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 7.8e-17 90.1 82 56.1
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.3e-16 89.4 81 58.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.7e-16 89.0 82 61.0
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 3.0e-16 88.2 82 58.5
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 6.6e-16 87.0 81 60.5
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.1e-15 86.3 76 57.9
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.1e-15 86.3 81 56.8
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.5e-15 85.9 81 53.1
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.5e-15 85.1 75 57.3
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.5e-15 85.1 76 57.9
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.3e-15 84.7 81 55.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 7.3e-15 83.6 78 55.1
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 9.5e-15 83.2 79 55.7
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.2e-14 82.8 78 55.1
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.6e-14 82.4 74 59.5
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.6e-14 82.4 74 59.5
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.6e-14 82.4 77 58.4
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 2.1e-14 82.0 78 59.0
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.8e-14 81.6 70 62.9
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 2.8e-14 81.6 75 57.3
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.6e-14 81.3 76 59.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.6e-14 81.3 76 55.3
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.6e-14 81.3 79 54.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 4.7e-14 80.9 71 57.7
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.7e-14 80.9 81 59.3
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 6.2e-14 80.5 83 50.6
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.1e-14 80.1 79 55.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 8.1e-14 80.1 83 54.2
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.1e-14 80.1 81 59.3
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.1e-13 79.7 75 56.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.1e-13 79.7 83 53.0
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.1e-13 79.7 74 58.1
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-13 79.7 74 58.1
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.1e-13 79.7 77 57.1
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.1e-13 79.7 74 58.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.4e-13 79.3 83 53.0
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-13 79.3 74 58.1
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.4e-13 79.3 72 59.7
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.8e-13 79.0 78 57.7
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-13 79.0 75 56.0
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.8e-13 79.0 81 53.1
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 1.8e-13 79.0 78 53.8
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.8e-13 79.0 85 50.6
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.1e-13 78.2 79 54.4
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.1e-13 78.2 77 53.2
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 3.1e-13 78.2 76 53.9
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.0e-13 77.8 79 54.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 5.2e-13 77.4 79 57.0
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.2e-13 77.4 83 55.4
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 5.2e-13 77.4 79 53.2
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 8.9e-13 76.6 77 53.2
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 8.9e-13 76.6 77 53.2
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 8.9e-13 76.6 80 51.2
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 8.9e-13 76.6 79 50.6
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 85 50.6
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.2e-12 76.3 85 50.6
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.2e-12 76.3 80 51.2
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 1.2e-12 76.3 75 53.3
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.5e-12 75.9 78 55.1
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.5e-12 75.9 77 53.2
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.5e-12 75.9 81 54.3
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.0e-12 75.5 81 54.3
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 2.0e-12 75.5 84 50.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.0e-12 75.5 82 56.1
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.6e-12 75.1 76 55.3
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.6e-12 75.1 76 56.6
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.6e-12 75.1 70 55.7
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.4e-12 74.3 91 48.4
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.4e-12 74.3 91 48.4
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 4.4e-12 74.3 77 55.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.8e-12 73.9 85 47.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 5.8e-12 73.9 74 52.7
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 7.6e-12 73.6 74 54.1
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 7.6e-12 73.6 77 50.6
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 9.9e-12 73.2 89 50.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.3e-11 72.8 72 52.8
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.3e-11 72.8 76 51.3
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-11 72.8 76 51.3
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.3e-11 72.8 78 51.3
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.7e-11 72.4 70 52.9
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 2.2e-11 72.0 74 51.4
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.9e-11 71.6 82 50.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 2.9e-11 71.6 76 51.3
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.9e-11 71.6 84 50.0
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.8e-11 71.2 66 56.1
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.9e-11 70.9 91 47.3
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.9e-11 70.9 82 48.8
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 4.9e-11 70.9 76 47.4
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.4e-11 70.5 76 50.0
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 6.4e-11 70.5 80 48.8
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 8.4e-11 70.1 80 47.5
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 8.4e-11 70.1 80 48.8
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-10 69.7 81 50.6
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.1e-10 69.7 76 53.9
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-10 69.3 88 44.3
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.4e-10 69.3 74 48.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.4e-10 69.3 80 48.8
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.9e-10 68.9 76 52.6
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.9e-10 68.9 61 57.4
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.9e-10 68.9 72 58.3
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.9e-10 68.9 71 53.5
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.9e-10 68.9 80 48.8
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 2.4e-10 68.6 72 51.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.4e-10 68.6 84 50.0
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.2e-10 68.2 81 51.9
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.2e-10 68.2 76 51.3
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 4.1e-10 67.8 87 48.3
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 5.4e-10 67.4 78 50.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 5.4e-10 67.4 71 49.3
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.4e-10 67.4 87 48.3
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.4e-10 67.4 68 54.4
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.1e-10 67.0 76 51.3
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 9.2e-10 66.6 87 44.8
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 9.2e-10 66.6 71 53.5
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.2e-09 66.2 70 48.6
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.2e-09 66.2 78 50.0
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.2e-09 66.2 85 45.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-09 66.2 77 48.1
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-09 65.9 82 47.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.6e-09 65.9 91 44.0
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.1e-09 65.5 75 49.3
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.1e-09 65.5 98 42.9
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.7e-09 65.1 79 45.6
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.7e-09 65.1 80 46.2
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 2.7e-09 65.1 79 41.8
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.0e-09 63.9 71 56.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.3e-08 62.0 78 46.2
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.0e-08 61.6 71 49.3
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.0e-08 61.6 71 46.5
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.0e-08 61.6 84 41.7
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 1.5e-07 59.3 45 60.0
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.9e-07 58.9 95 41.1
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 3.3e-07 58.2 80 42.5
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.1e-06 55.5 78 43.6
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 2.8e-06 55.1 73 43.8
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.8e-06 55.1 28 85.7


User provided reference genes

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