Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 5.6e-136 487.6 253 100.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-126 456.1 308 81.5
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.0e-118 428.3 297 80.1
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.0e-85 319.7 253 71.5
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 5.3e-70 268.5 264 61.7
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.5e-59 233.8 255 56.9
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.7e-53 213.0 256 54.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 4.5e-53 212.2 255 52.5
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 6.5e-52 208.4 197 64.5
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 3.6e-50 202.6 259 51.4
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.2e-48 197.6 255 51.0
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.0e-32 143.7 128 66.4
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 9.2e-30 134.8 265 41.1
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 5.6e-27 125.6 275 38.9
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.2e-26 124.4 270 37.4
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.1e-25 121.3 272 36.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.4e-25 120.9 275 36.4
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-25 120.6 272 37.9
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 2.6e-24 116.7 272 37.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 5.8e-24 115.5 275 37.8
BcaB06g26463 Brassica carinata HOM05D005115 ORTHO05D005703 2.2e-23 113.6 93 67.7
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.5e-21 106.3 277 33.6
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 6.0e-21 105.5 233 38.6
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 5.1e-20 102.4 191 42.9
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.1e-19 101.3 280 34.6
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.1e-18 97.1 120 55.0
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.1e-17 94.7 255 35.7
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 3.1e-17 93.2 296 33.8
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.5e-16 90.9 264 35.6
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.6e-16 90.1 112 55.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 3.4e-16 89.7 255 32.5
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 4.4e-16 89.4 239 36.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-15 87.8 121 47.9
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.2e-15 87.0 121 47.9
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.9e-15 86.7 112 54.5
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.9e-15 86.7 127 44.9
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 4.9e-15 85.9 296 33.1
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 4.9e-15 85.9 113 50.4
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.4e-15 85.5 121 48.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.4e-15 85.5 121 48.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 6.4e-15 85.5 255 32.9
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 6.4e-15 85.5 120 47.5
CARHR231330 Cardamine hirsuta HOM05D005115 ORTHO05D005703 8.4e-15 85.1 121 47.1
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 3.2e-14 83.2 120 45.8
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 4.1e-14 82.8 134 45.5
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 5.4e-14 82.4 258 33.3
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 7.1e-14 82.0 116 48.3
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 7.1e-14 82.0 253 34.4
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 9.2e-14 81.6 215 34.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.2e-13 81.3 121 45.5
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.6e-13 80.9 131 45.8
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.6e-13 80.9 253 32.0
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.6e-13 80.9 272 34.6
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.6e-13 80.9 272 34.6
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 2.1e-13 80.5 120 45.8
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 2.1e-13 80.5 121 45.5
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 2.7e-13 80.1 120 48.3
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 3.5e-13 79.7 120 46.7
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 3.5e-13 79.7 113 46.0
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.5e-13 79.7 113 46.0
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 4.6e-13 79.3 120 44.2
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 6.0e-13 79.0 120 45.8
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 7.8e-13 78.6 123 42.3
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.8e-13 78.6 124 45.2
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.8e-13 78.6 259 32.4
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 7.8e-13 78.6 113 44.2
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 7.8e-13 78.6 127 41.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 7.8e-13 78.6 120 42.5
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.0e-12 78.2 253 31.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.3e-12 77.8 120 43.3
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.7e-12 77.4 122 48.4
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.7e-12 77.4 121 45.5
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 2.3e-12 77.0 126 46.0
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 2.3e-12 77.0 126 46.0
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.3e-12 77.0 115 46.1
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.3e-12 77.0 120 44.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 2.3e-12 77.0 120 42.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 3.0e-12 76.6 258 32.6
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.0e-12 76.6 251 31.1
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.0e-12 76.6 251 31.1
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 3.0e-12 76.6 120 43.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.0e-12 76.6 120 42.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.0e-12 76.6 113 45.1
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.0e-12 76.6 113 45.1
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 3.0e-12 76.6 121 45.5
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.9e-12 76.3 262 31.7
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 3.9e-12 76.3 104 51.0
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.1e-12 75.9 127 40.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 6.6e-12 75.5 121 43.0
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 8.7e-12 75.1 120 43.3
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 8.7e-12 75.1 259 30.1
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 8.7e-12 75.1 120 44.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 8.7e-12 75.1 131 42.0
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.5e-11 74.3 121 43.8
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.5e-11 74.3 133 45.1
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.3e-11 73.2 251 32.3
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.3e-11 73.2 252 32.1
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 4.3e-11 72.8 108 49.1
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 4.3e-11 72.8 112 48.2
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 5.6e-11 72.4 127 45.7
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 5.6e-11 72.4 120 40.8
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 7.3e-11 72.0 118 40.7
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 9.6e-11 71.6 130 39.2
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 9.6e-11 71.6 99 45.5
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.2e-10 71.2 123 43.9
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.2e-10 71.2 131 42.0
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.2e-10 71.2 99 46.5
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.2e-10 71.2 120 43.3
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.1e-10 70.5 131 40.5
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 2.8e-10 70.1 109 45.9
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 6.2e-10 68.9 122 43.4
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 8.1e-10 68.6 120 42.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.1e-09 68.2 122 42.6
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-09 68.2 118 45.8
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-09 67.8 286 28.3
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 6.9e-09 65.5 135 35.6
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 9.0e-09 65.1 296 34.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.2e-08 64.7 125 41.6
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.5e-08 64.3 121 41.3
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.0e-08 63.9 146 37.0
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.4e-08 63.2 132 39.4
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 4.4e-08 62.8 122 41.0
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.4e-08 62.8 122 37.7
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 9.9e-08 61.6 137 38.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.3e-07 61.2 137 38.0
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.3e-07 61.2 282 27.3
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.2e-07 60.5 112 40.2
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.9e-07 60.1 107 40.2
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.9e-07 60.1 102 41.2
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 8.4e-07 58.5 123 38.2
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.1e-06 58.2 127 40.2
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 3.2e-06 56.6 58 55.2


User provided reference genes

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