Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 2.3e-35 151.8 79 100.0
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 2.3e-35 151.8 79 100.0
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 2.3e-35 151.8 79 100.0
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 2.3e-35 151.8 79 100.0
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 2.3e-35 151.8 79 100.0
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 5.2e-32 140.6 79 92.4
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.3e-27 125.2 79 82.3
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 2.8e-25 118.2 76 80.3
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 2.8e-25 118.2 76 80.3
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 2.8e-25 118.2 76 80.3
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 4.7e-25 117.5 76 80.3
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 6.2e-25 117.1 79 77.2
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.5e-23 112.5 80 76.2
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 1.0e-19 99.8 82 72.0
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.3e-19 98.6 59 78.0
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.0e-19 98.2 84 64.3
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 3.0e-19 98.2 77 71.4
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 3.0e-19 98.2 77 71.4
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 3.9e-19 97.8 84 64.3
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.1e-19 97.4 85 63.5
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 8.7e-19 96.7 84 64.3
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.3e-18 94.4 84 61.9
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 5.3e-16 87.4 84 61.9
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 5.3e-16 87.4 84 61.9
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 3.4e-15 84.7 84 60.7
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 7.6e-15 83.6 84 58.3
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 9.9e-15 83.2 81 61.7
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 9.9e-15 83.2 81 61.7
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.2e-14 82.0 63 68.3
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 8.4e-14 80.1 85 58.8
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 8.4e-14 80.1 85 58.8
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 8.4e-14 80.1 85 58.8
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 8.4e-14 80.1 85 58.8
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 1.1e-13 79.7 86 58.1
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 1.1e-13 79.7 86 58.1
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.4e-13 78.6 69 59.4
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 2.7e-12 75.1 84 57.1
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 2.7e-12 75.1 84 57.1
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 2.7e-12 75.1 84 57.1
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.9e-12 73.6 58 60.3
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.3e-11 72.8 61 57.4
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 1.8e-11 72.4 81 56.8
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 1.8e-11 72.4 81 56.8
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.3e-11 72.0 55 56.4
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.0e-11 71.6 78 44.9
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.9e-10 68.9 54 61.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 4.3e-10 67.8 64 57.8
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 7.4e-10 67.0 77 42.9
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 9.6e-10 66.6 70 48.6
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.3e-09 66.2 63 54.0
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.6e-09 65.9 65 50.8
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.8e-09 65.1 73 49.3
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 3.7e-09 64.7 62 53.2
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 3.7e-09 64.7 70 47.1
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 6.2e-09 63.9 55 56.4
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 6.2e-09 63.9 58 55.2
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 8.1e-09 63.5 69 47.8
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 1.1e-08 63.2 81 50.6
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 1.1e-08 63.2 83 49.4
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.1e-08 63.2 58 56.9
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.1e-08 63.2 69 46.4
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.1e-08 63.2 65 50.8
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.1e-08 63.2 70 48.6
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.4e-08 62.8 60 51.7
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.4e-08 62.8 66 48.5
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.8e-08 62.4 73 46.6
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.8e-08 62.4 55 52.7
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.4e-08 62.0 65 52.3
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.4e-08 62.0 68 47.1
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.4e-08 62.0 68 51.5
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.4e-08 62.0 61 49.2
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.4e-08 62.0 54 55.6
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 3.1e-08 61.6 66 48.5
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.1e-08 61.6 69 47.8
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.1e-08 61.6 61 52.5
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 4.0e-08 61.2 66 48.5
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.3e-08 60.8 66 48.5
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.3e-08 60.8 66 48.5
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 5.3e-08 60.8 58 53.4
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 5.3e-08 60.8 68 50.0
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 5.3e-08 60.8 54 55.6
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 6.9e-08 60.5 60 51.7
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 6.9e-08 60.5 62 48.4
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.9e-08 60.5 64 46.9
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.9e-08 60.5 64 46.9
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 6.9e-08 60.5 70 50.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 6.9e-08 60.5 49 63.3
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 6.9e-08 60.5 58 51.7
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 9.0e-08 60.1 66 51.5
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 9.0e-08 60.1 61 50.8
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 9.0e-08 60.1 58 51.7
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.2e-07 59.7 64 46.9
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 1.2e-07 59.7 54 51.9
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.2e-07 59.7 61 49.2
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 54 51.9
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 54 51.9
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.5e-07 59.3 54 51.9
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 61 50.8
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.5e-07 59.3 61 50.8
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 61 50.8
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.5e-07 59.3 55 52.7
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.0e-07 58.9 67 44.8
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.0e-07 58.9 58 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.6e-07 58.5 55 49.1
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 2.6e-07 58.5 67 49.3
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 2.6e-07 58.5 67 47.8
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 2.6e-07 58.5 64 50.0
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 2.6e-07 58.5 54 51.9
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.4e-07 58.2 63 47.6
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.4e-07 58.2 61 49.2
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 3.4e-07 58.2 56 44.6
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.4e-07 58.2 60 46.7
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 4.5e-07 57.8 62 45.2
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 4.5e-07 57.8 62 45.2
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.8e-07 57.4 49 59.2
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.8e-07 57.4 58 48.3
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 5.8e-07 57.4 76 39.5
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 7.6e-07 57.0 54 48.1
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 9.9e-07 56.6 76 38.2
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 9.9e-07 56.6 56 53.6
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 9.9e-07 56.6 52 48.1
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.3e-06 56.2 63 44.4
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.3e-06 56.2 63 44.4
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.3e-06 56.2 64 45.3
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.2e-06 55.5 60 46.7
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 2.2e-06 55.5 66 47.0
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 2.2e-06 55.5 54 50.0
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 3.8e-06 54.7 62 48.4
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.8e-06 54.7 88 37.5
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 3.8e-06 54.7 83 36.1
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 4.9e-06 54.3 62 46.8
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 4.9e-06 54.3 52 48.1
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 6.4e-06 53.9 45 55.6
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 6.4e-06 53.9 45 60.0
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 6.4e-06 53.9 60 51.7
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 8.4e-06 53.5 78 42.3
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.4e-06 53.5 60 45.0
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.4e-06 53.5 60 45.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.4e-06 53.5 57 47.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.4e-06 53.5 51 51.0
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 8.4e-06 53.5 73 45.2


User provided reference genes

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