Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 7.0e-133 477.2 235 100.0
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 7.8e-132 473.8 235 99.1
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 7.8e-132 473.8 235 99.1
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 7.3e-130 467.2 235 98.3
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.6e-123 443.7 235 90.6
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.6e-119 432.2 236 89.4
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 3.0e-115 418.7 235 89.8
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 9.6e-106 387.1 230 79.1
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.0e-104 381.7 231 77.1
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 8.9e-104 380.6 230 77.4
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 2.2e-102 375.9 230 76.1
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 2.9e-102 375.6 229 76.4
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 7.1e-101 370.9 230 76.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 9.3e-101 370.5 230 75.7
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 2.7e-100 369.0 230 75.7
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 3.5e-100 368.6 230 76.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.7e-99 366.3 230 75.2
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.7e-86 323.2 232 63.8
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 1.6e-84 316.6 232 62.9
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.1e-84 316.2 232 62.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 4.6e-84 315.1 232 62.5
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 4.6e-84 315.1 232 62.9
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.6e-84 315.1 231 62.3
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 6.0e-84 314.7 235 63.0
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 7.9e-84 314.3 232 62.1
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 7.9e-84 314.3 232 62.1
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 7.9e-84 314.3 232 62.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.3e-83 312.8 232 61.6
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.9e-83 312.0 232 61.2
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.1e-83 311.6 229 63.3
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.7e-83 311.2 232 61.2
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 8.7e-83 310.8 232 60.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.9e-82 309.7 232 60.3
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 5.6e-82 308.1 231 61.0
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.4e-82 307.8 232 60.8
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.7e-81 305.4 232 59.9
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 3.7e-81 305.4 233 61.4
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.1e-81 304.3 231 61.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.1e-80 303.9 231 61.9
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 3.1e-80 302.4 241 57.7
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.2e-79 300.4 231 60.6
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-79 300.4 232 60.8
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.5e-79 300.1 232 59.5
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.0e-79 299.7 230 58.7
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.0e-79 299.7 230 60.4
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.6e-79 299.3 181 76.8
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 4.5e-79 298.5 233 59.2
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 7.6e-79 297.7 241 56.4
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.7e-78 296.6 231 57.6
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.8e-78 295.4 234 59.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 4.9e-78 295.0 230 59.6
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 6.5e-78 294.7 231 58.9
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 8.4e-78 294.3 230 61.3
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.9e-77 293.1 236 58.5
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.5e-77 292.7 231 59.7
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 4.2e-77 292.0 232 58.2
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.5e-77 291.6 232 59.1
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 7.1e-77 291.2 231 57.6
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 7.1e-77 291.2 230 60.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 9.3e-77 290.8 231 58.4
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.2e-76 290.4 232 57.8
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.2e-76 290.4 236 58.9
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.6e-76 290.0 231 57.1
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.1e-76 289.7 232 59.1
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.1e-76 289.7 238 56.7
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.5e-76 288.9 231 58.0
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.5e-76 288.9 231 58.0
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 3.5e-76 288.9 230 57.0
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 4.6e-76 288.5 234 57.7
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 4.6e-76 288.5 231 57.1
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 4.6e-76 288.5 231 57.1
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.0e-75 287.3 233 56.2
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 1.0e-75 287.3 230 59.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.3e-75 287.0 239 57.3
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.3e-75 287.0 231 56.7
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.8e-75 286.6 231 58.0
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.8e-75 286.6 231 57.6
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.0e-75 285.8 232 58.2
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.9e-75 285.4 232 59.1
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 6.7e-75 284.6 231 55.4
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 8.7e-75 284.3 232 56.5
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.1e-74 283.9 231 57.1
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.1e-74 283.9 231 55.4
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 2.5e-74 282.7 233 55.4
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 2.5e-74 282.7 231 55.0
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.3e-74 282.3 230 55.7
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.3e-74 282.0 231 55.0
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 4.3e-74 282.0 231 56.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 4.3e-74 282.0 231 58.0
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.7e-74 281.6 234 56.4
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 5.7e-74 281.6 232 56.5
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 7.4e-74 281.2 231 58.4
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.3e-73 280.4 230 56.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.6e-73 280.0 231 57.1
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.1e-73 279.6 166 77.7
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 3.7e-73 278.9 214 61.2
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 3.7e-73 278.9 230 56.1
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 8.2e-73 277.7 231 56.7
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.1e-72 277.3 232 57.3
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 5.3e-72 275.0 236 55.1
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 9.0e-72 274.2 232 56.9
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 1.5e-71 273.5 239 54.4
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.5e-70 268.1 230 53.9
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 4.2e-69 265.4 134 93.3
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.5e-69 265.0 218 56.4
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 7.2e-69 264.6 231 52.4
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.3e-67 260.4 230 52.2
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.3e-67 260.4 233 54.5
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.8e-67 260.0 231 53.2
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-67 258.8 232 53.0
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-67 258.8 232 53.0
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.1e-67 258.5 219 55.7
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 5.1e-67 258.5 214 56.1
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.7e-67 257.7 231 50.2
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.7e-66 255.0 231 51.1
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 9.7e-66 254.2 239 50.2
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.6e-65 253.4 217 54.4
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.6e-65 253.4 242 48.8
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 6.3e-65 251.5 231 50.2
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.4e-64 250.4 236 51.7
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 3.8e-62 242.3 191 59.7
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 6.5e-62 241.5 231 51.1
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 8.5e-62 241.1 232 50.0
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 8.5e-62 241.1 232 50.0
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.9e-61 240.0 230 48.3
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 9.4e-61 237.7 232 49.1
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 9.4e-61 237.7 232 49.1
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 6.7e-59 231.5 227 51.5
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.5e-58 230.3 205 52.7
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 8.2e-57 224.6 227 47.1
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.8e-56 223.4 230 50.9
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.9e-55 218.4 210 50.5
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 4.2e-53 212.2 230 47.4
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.6e-52 210.3 122 78.7
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.7e-52 209.5 146 65.8
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.7e-50 201.8 237 45.6
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 6.3e-49 198.4 154 59.1
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 2.7e-44 183.0 232 42.2
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.6e-44 182.6 232 42.2
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.8e-43 180.3 166 52.4
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 6.7e-43 178.3 139 56.8
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-41 173.3 240 42.1
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.0e-38 162.2 110 72.7
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.5e-37 160.6 373 30.6
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.8e-35 153.7 232 39.2
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.8e-35 153.7 125 57.6
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.0e-34 150.2 200 40.5
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.8e-32 143.7 113 58.4
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 5.9e-31 138.7 224 36.2
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 2.3e-27 126.7 114 50.9
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 4.9e-25 119.0 67 86.6
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 4.1e-24 115.9 197 35.5
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.2e-24 114.8 118 44.9
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.7e-22 110.5 197 35.0
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.6e-20 104.0 214 30.4
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-18 95.9 116 44.0
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 2.2e-17 93.6 174 33.3
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.7e-15 86.7 154 35.1
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.0e-14 84.7 87 47.1
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 5.6e-13 79.0 65 52.3
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 4.0e-11 72.8 70 47.1
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 2.9e-09 66.6 65 53.8
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 6.4e-09 65.5 150 31.3
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 8.3e-09 65.1 64 48.4
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.1e-08 64.7 47 61.7
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 9.2e-08 61.6 66 43.9
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 1.6e-07 60.8 58 51.7
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.7e-07 60.1 44 59.1


User provided reference genes

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