Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 1.1e-73 280.0 151 100.0
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 1.2e-64 250.0 136 97.8
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 1.2e-64 250.0 136 97.8
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 1.2e-64 250.0 136 97.8
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 2.9e-63 245.4 136 96.3
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 2.1e-61 239.2 136 94.9
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 6.4e-55 217.6 138 85.5
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 1.9e-54 216.1 138 82.6
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 1.2e-45 186.8 136 75.0
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 1.5e-43 179.9 136 72.8
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 4.8e-42 174.9 136 71.3
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 3.1e-41 172.2 136 70.6
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 3.4e-32 142.1 136 62.5
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 3.8e-31 138.7 136 63.2
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 5.0e-23 111.7 118 60.2
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 1.1e-22 110.5 78 74.4
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 1.2e-21 107.1 130 52.3
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 1.4e-20 103.6 133 50.4
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 5.2e-20 101.7 136 50.0
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 6.7e-20 101.3 79 67.1
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 6.7e-20 101.3 136 48.5
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 6.7e-20 101.3 79 67.1
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 6.7e-20 101.3 99 60.6
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 6.7e-20 101.3 99 60.6
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 6.7e-20 101.3 99 60.6
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 1.1e-19 100.5 136 46.3
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 1.1e-19 100.5 76 71.1
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 2.0e-19 99.8 136 47.8
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 2.0e-19 99.8 81 66.7
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 2.6e-19 99.4 85 63.5
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 2.6e-19 99.4 85 63.5
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 9.7e-19 97.4 86 62.8
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 9.7e-19 97.4 81 65.4
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.3e-18 97.1 80 65.0
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 1.7e-18 96.7 90 56.7
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 1.7e-18 96.7 74 67.6
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 4.8e-18 95.1 123 47.2
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 4.8e-18 95.1 129 50.4
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 6.3e-18 94.7 81 64.2
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 6.3e-18 94.7 81 64.2
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 6.3e-18 94.7 133 47.4
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 1.1e-17 94.0 75 64.0
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 1.4e-17 93.6 77 66.2
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 1.8e-17 93.2 92 56.5
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 4.1e-17 92.0 129 45.0
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 4.1e-17 92.0 136 46.3
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 5.3e-17 91.7 79 65.8
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 5.3e-17 91.7 136 45.6
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 5.3e-17 91.7 74 67.6
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 5.3e-17 91.7 136 43.4
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 9.1e-17 90.9 83 57.8
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 1.2e-16 90.5 123 48.8
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 1.2e-16 90.5 81 58.0
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 1.2e-16 90.5 104 51.0
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 2.6e-16 89.4 143 43.4
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 5.9e-16 88.2 88 58.0
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 5.9e-16 88.2 113 48.7
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 1.0e-15 87.4 76 60.5
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 1.7e-15 86.7 98 55.1
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 1.7e-15 86.7 117 50.4
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 2.2e-15 86.3 88 58.0
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 3.8e-15 85.5 81 53.1
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 3.8e-15 85.5 81 53.1
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 6.5e-15 84.7 79 59.5
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 6.5e-15 84.7 73 63.0
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 8.5e-15 84.3 128 46.1
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.1e-14 84.0 91 54.9
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.1e-14 84.0 123 48.0
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 1.1e-14 84.0 140 42.9
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 1.1e-14 84.0 122 46.7
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 1.5e-14 83.6 132 39.4
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 1.5e-14 83.6 67 65.7
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 1.9e-14 83.2 130 44.6
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 1.9e-14 83.2 68 64.7
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.5e-14 82.8 77 58.4
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 2.5e-14 82.8 65 61.5
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 5.5e-14 81.6 87 55.2
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 7.2e-14 81.3 73 60.3
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.2e-13 80.5 60 68.3
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 1.2e-13 80.5 95 50.5
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 1.2e-13 80.5 88 52.3
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 1.2e-13 80.5 80 51.2
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 1.6e-13 80.1 75 57.3
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 2.1e-13 79.7 75 57.3
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 2.7e-13 79.3 135 42.2
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 2.7e-13 79.3 69 56.5
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 4.7e-13 78.6 79 51.9
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 8.0e-13 77.8 65 64.6
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 1.0e-12 77.4 82 48.8
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 1.0e-12 77.4 109 46.8
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 5.2e-12 75.1 97 52.6
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 6.7e-12 74.7 97 52.6
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 8.8e-12 74.3 99 49.5
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 1.5e-11 73.6 140 45.0
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 4.4e-11 72.0 81 51.9
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 5.7e-11 71.6 57 68.4
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 5.7e-11 71.6 65 53.8
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 1.8e-09 66.6 61 65.6
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 5.9e-08 61.6 84 44.0
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 1.3e-07 60.5 87 46.0
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 7.2e-06 54.7 87 41.4


User provided reference genes

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