Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50873 Brassica carinata HOM05D007813 ORTHO05D009861 7.6e-64 247.3 151 100.0
C01p19700 Brassica napus HOM05D007813 ORTHO05D009861 1.6e-58 229.6 153 90.2
BolC1t01897H Brassica oleracea HOM05D007813 ORTHO05D009861 1.6e-58 229.6 153 90.2
A01p15750 Brassica napus HOM05D007813 ORTHO05D009861 5.8e-56 221.1 154 88.3
BraA01t01511Z Brassica rapa HOM05D007813 ORTHO05D009861 1.4e-54 216.5 153 85.6
Thhalv10026382m.g Eutrema salsugineum HOM05D007813 ORTHO05D009861 1.0e-44 183.7 127 78.0
Sp7g22350 Schrenkiella parvula HOM05D007813 ORTHO05D009861 9.6e-43 177.2 163 72.4
AT4G24370 Arabidopsis thaliana HOM05D007813 ORTHO05D009861 7.9e-37 157.5 152 68.4
Carub.0007s1668 Capsella rubella HOM05D007813 ORTHO05D009861 1.3e-36 156.8 129 69.0
CARHR231780 Cardamine hirsuta HOM05D007813 ORTHO05D009861 5.1e-36 154.8 130 71.5
AL7G28850 Arabidopsis lyrata HOM05D007813 ORTHO05D009861 2.2e-31 139.4 152 70.4
Aa31LG4G9500 Aethionema arabicum HOM05D007813 ORTHO05D009861 2.2e-26 122.9 128 54.7
CsaV3_5G021820 Cucumis sativus L. HOM05D007813 ORTHO05D009861 3.9e-20 102.1 135 48.1
ClCG01G008030 Citrullus lanatus HOM05D007813 ORTHO05D009861 5.2e-20 101.7 144 46.5
Duzib248G1033 Durio zibethinus HOM05D007813 ORTHO05D009861 1.5e-19 100.1 155 44.5
Cpa.g.sc30.28 Carica papaya HOM05D007813 ORTHO05D009861 3.3e-19 99.0 137 47.4
TWI53G2082 Tripterygium wilfordii HOM05D007813 ORTHO05D009861 4.4e-19 98.6 133 53.4
Thecc.02G153800 Theobroma cacao HOM05D007813 ORTHO05D009861 1.3e-18 97.1 150 49.3
MELO3C005074.2 Cucumis melo HOM05D007813 ORTHO05D009861 1.7e-18 96.7 142 47.9
COL.COLO4_33123 Corchorus olitorius HOM05D007813 ORTHO05D009861 4.8e-18 95.1 148 48.0
Peaxi162Scf00643g00047 Petunia axillaris HOM05D007813 ORTHO05D009861 9.1e-17 90.9 129 45.0
Cc11_g01070 Coffea canephora HOM05D007813 ORTHO05D009861 3.5e-16 89.0 136 44.9
Sed0004061 Sechium edule HOM05D007813 ORTHO05D009861 3.5e-16 89.0 138 50.7
Gorai.005G213200 Gossypium raimondii HOM05D007813 ORTHO05D009861 5.9e-16 88.2 157 47.1
Manes.11G001000 Manihot esculenta HOM05D007813 ORTHO05D009861 5.9e-16 88.2 128 48.4
Sabra07G0000100 Salix brachista HOM05D007813 ORTHO05D009861 5.9e-16 88.2 128 48.4
Gohir.A03G167400 Gossypium hirsutum HOM05D007813 ORTHO05D009861 7.7e-16 87.8 157 46.5
Gohir.D02G190500 Gossypium hirsutum HOM05D007813 ORTHO05D009861 2.2e-15 86.3 155 46.5
CANSAT78G1292 Cannabis sativa HOM05D007813 ORTHO05D009861 6.5e-15 84.7 144 40.3
MSTRG.2075 Avicennia marina HOM05D007813 ORTHO05D009861 1.1e-14 84.0 129 44.2
Lj9P278T15 Lonicera japonica HOM05D007813 ORTHO05D009861 1.5e-14 83.6 128 43.8
Sc06g0009980 Simmondsia chinensis HOM05D007813 ORTHO05D009861 2.5e-14 82.8 130 42.3
Haze_17409 Corylus avellana HOM05D001339 ORTHO05D003609 4.2e-14 82.0 125 45.6
Actinidia04359 Actinidia chinensis HOM05D007813 ORTHO05D009861 5.5e-14 81.6 150 42.7
EL10Ac9g22652 Beta vulgaris HOM05D000001 ORTHO05D000003 9.4e-14 80.9 141 42.6
Nitab4.5_0006894g0030 Nicotiana tabacum HOM05D007813 ORTHO05D009861 1.2e-13 80.5 128 45.3
Ciclev10032850m.g Citrus clementina HOM05D007813 ORTHO05D009861 1.6e-13 80.1 133 43.6
Sopen01g035700 Solanum pennellii HOM05D007813 ORTHO05D009861 3.6e-13 79.0 131 43.5
Oeu039115.1 Olea europaea HOM05D007813 ORTHO05D009861 6.1e-13 78.2 139 41.7
Hund21950 Selenicereus undatus HOM05D007813 ORTHO05D009861 1.0e-12 77.4 141 39.7
PGSC0003DMG400031169 Solanum tuberosum HOM05D007813 ORTHO05D009861 1.0e-12 77.4 130 42.3
FvH4_4g37240 Fragaria vesca HOM05D007813 ORTHO05D009861 3.0e-12 75.9 131 44.3
Nitab4.5_0003448g0030 Nicotiana tabacum HOM05D007813 ORTHO05D009861 3.0e-12 75.9 128 42.2
Nitab4.5_0008487g0020 Nicotiana tabacum HOM05D007813 ORTHO05D009861 3.0e-12 75.9 128 41.4
DCAR_023485 Daucus carota HOM05D007813 ORTHO05D009861 4.0e-12 75.5 132 41.7
Nitab4.5_0000146g0130 Nicotiana tabacum HOM05D007813 ORTHO05D009861 5.2e-12 75.1 128 45.3
Nitab4.5_0004221g0010 Nicotiana tabacum HOM05D007813 ORTHO05D009861 6.7e-12 74.7 117 45.3
PSO717G0067 Papaver somniferum HOM05D007813 ORTHO05D009861 1.2e-11 73.9 130 43.8
FAN07G2714 Fragaria x ananassa HOM05D007813 ORTHO05D009861 1.5e-11 73.6 128 43.8
FAN17G2972 Fragaria x ananassa HOM05D007813 ORTHO05D009861 1.5e-11 73.6 129 44.2
Ah.01g003370 Amaranthus hybridus HOM05D007813 ORTHO05D009861 2.6e-11 72.8 141 39.0
Atru.chr11.1262 Acer truncatum HOM05D007813 ORTHO05D009861 7.5e-11 71.2 130 43.8
Migut.E00672 Erythranthe guttata HOM05D007813 ORTHO05D009861 7.5e-11 71.2 130 39.2
HanXRQChr11g0332791 Helianthus annuus HOM05D007813 ORTHO05D009861 9.7e-11 70.9 134 41.0
Dinv01363 Davidia involucrata HOM05D007813 ORTHO05D009861 1.7e-10 70.1 131 38.2
CiPaw.16G001800 Carya illinoinensis HOM05D007813 ORTHO05D009861 2.2e-10 69.7 135 40.7
PSO675G5803 Papaver somniferum HOM05D007813 ORTHO05D009861 2.8e-10 69.3 134 41.0
RhsimUnG0102800 Rhododendron simsii HOM05D007813 ORTHO05D009861 6.3e-10 68.2 136 45.6
MD13G1002400 Malus domestica HOM05D007813 ORTHO05D009861 1.1e-09 67.4 133 39.1
Aqoxy7G00887 Aquilegia oxysepala HOM05D007813 ORTHO05D009861 1.4e-09 67.0 129 41.1
QL01p000818 Quercus lobata HOM05D007813 ORTHO05D009861 2.4e-09 66.2 134 41.0
Lsat_1_v5_gn_6_66140 Lactuca sativa HOM05D007813 ORTHO05D009861 5.3e-09 65.1 146 39.0
Nitab4.5_0001077g0010 Nicotiana tabacum HOM05D007813 ORTHO05D009861 7.0e-09 64.7 128 40.6
Lju470C5T0 Lonicera japonica HOM05D007813 ORTHO05D009861 2.0e-08 63.2 133 39.1
unitig_699.g19640 Utricularia gibba HOM05D007813 ORTHO05D009861 2.0e-08 63.2 135 38.5
AUR62014985 Chenopodium quinoa HOM05D007813 ORTHO05D009861 3.5e-08 62.4 130 33.1
ECA233G3331 Erigeron canadensis HOM05D007813 ORTHO05D009861 1.3e-07 60.5 143 36.4
RcHm_v2.0_Chr4g0447031 Rosa chinensis HOM05D007813 ORTHO05D009861 1.3e-07 60.5 128 39.1
TAR374G1573 Trochodendron aralioides HOM05D007813 ORTHO05D009861 1.7e-07 60.1 145 37.2
Nn3g16575 Nelumbo nucifera HOM05D007813 ORTHO05D009861 2.9e-07 59.3 132 40.2
Prupe.1G350000 Prunus persica HOM05D007813 ORTHO05D009861 2.9e-07 59.3 136 44.9
SGA_v2.0_scaffold5G02767 Striga asiatica HOM05D007813 ORTHO05D009861 5.0e-07 58.5 127 37.0
THA.LOC104806727 Tarenaya hassleriana HOM05D007813 ORTHO05D009861 6.5e-07 58.2 76 47.4
HPP92_002530 Vanilla planifolia HOM05D007813 ORTHO05D009861 1.5e-06 57.0 137 35.0
Solyc01g089857.1 Solanum lycopersicum HOM05D007813 ORTHO05D009861 1.9e-06 56.6 90 43.3


User provided reference genes

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