Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 6.6e-60 233.8 115 100.0
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 7.6e-48 193.7 113 85.8
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-46 189.1 103 92.2
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-46 189.1 114 85.1
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.9e-46 189.1 103 92.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 1.9e-35 152.5 105 77.1
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-30 136.3 90 77.8
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-30 136.3 90 77.8
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-25 120.2 122 61.5
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-25 119.8 116 60.3
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.4e-25 119.8 116 60.3
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.4e-25 119.0 125 58.4
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 4.1e-25 118.2 118 59.3
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 4.1e-25 118.2 118 59.3
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.1e-25 118.2 131 58.0
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.3e-25 117.9 129 57.4
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.4e-24 115.2 122 56.6
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.0e-23 113.6 109 61.5
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-22 109.8 109 59.6
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-20 102.8 109 56.9
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.8e-20 102.8 109 56.9
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.9e-19 99.4 131 52.7
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.2e-18 95.9 129 51.9
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 4.1e-17 91.7 130 47.7
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 4.1e-17 91.7 111 53.2
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 5.3e-17 91.3 111 53.2
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 6.9e-17 90.9 125 49.6
BolC5t34865H Brassica oleracea HOM05D029007 ORTHO05D032317 5.9e-16 87.8 66 75.8
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 2.2e-15 85.9 47 93.6
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.9e-15 85.5 128 46.1
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-14 82.8 111 49.5
C05p62060 Brassica napus HOM05D029007 ORTHO05D004576 4.2e-14 81.6 66 71.2
BcaC05g30002 Brassica carinata HOM05D029007 ORTHO05D032317 5.5e-14 81.3 60 76.7
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.5e-14 81.3 121 47.9
C02p60450 Brassica napus HOM05D029007 ORTHO05D032317 7.2e-14 80.9 64 71.9
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 7.2e-14 80.9 127 38.6
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.2e-13 80.1 128 46.9
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.1e-13 79.3 115 47.8
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.1e-13 79.3 117 47.0
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.1e-13 79.3 117 47.0
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-13 79.0 117 47.0
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-13 79.0 117 47.0
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.7e-13 79.0 129 37.2
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.6e-13 78.6 118 43.2
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 3.6e-13 78.6 111 46.8
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 3.6e-13 78.6 120 49.2
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 3.6e-13 78.6 120 49.2
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 3.6e-13 78.6 111 46.8
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 4.6e-13 78.2 122 40.2
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-13 78.2 129 37.2
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 6.1e-13 77.8 120 49.2
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 7.9e-13 77.4 140 35.0
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 7.9e-13 77.4 119 48.7
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.0e-12 77.0 118 47.5
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-12 77.0 129 38.0
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.4e-12 76.6 150 39.3
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-12 76.6 129 36.4
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-12 76.3 118 45.8
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-12 76.3 116 47.4
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.8e-12 76.3 117 47.0
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 1.8e-12 76.3 138 39.1
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-12 76.3 129 36.4
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-12 76.3 129 36.4
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-12 76.3 129 36.4
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-12 76.3 129 36.4
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-12 75.9 114 40.4
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 3.9e-12 75.1 155 34.2
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-12 75.1 129 35.7
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.9e-12 75.1 122 38.5
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.9e-12 75.1 129 36.4
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 6.7e-12 74.3 143 34.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.7e-12 74.3 114 37.7
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.7e-12 74.3 129 35.7
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 8.8e-12 73.9 123 43.1
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.0e-11 72.8 144 37.5
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 2.5e-11 72.4 143 34.3
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.5e-11 72.4 147 34.0
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.3e-11 71.6 143 34.3
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.3e-11 71.6 143 34.3
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.4e-11 70.9 143 34.3
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.4e-11 70.9 129 34.1
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 7.4e-11 70.9 147 33.3
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 7.4e-11 70.9 139 36.0
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 9.7e-11 70.5 145 32.4
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.3e-10 70.1 118 39.0
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 1.3e-10 70.1 144 34.7
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.7e-10 69.7 118 37.3
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.7e-10 69.7 146 34.2
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.2e-10 69.3 118 44.1
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 2.2e-10 69.3 144 32.6
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.8e-10 68.9 119 42.9
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 2.8e-10 68.9 146 34.2
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.8e-10 68.9 146 34.2
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 2.8e-10 68.9 146 34.2
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.7e-10 68.6 146 34.2
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 3.7e-10 68.6 129 37.2
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 3.7e-10 68.6 148 33.1
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 6.3e-10 67.8 142 33.1
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.2e-10 67.4 145 34.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 8.2e-10 67.4 139 32.4
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.4e-09 66.6 143 31.5
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.8e-09 66.2 145 32.4
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 1.8e-09 66.2 135 36.3
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.8e-09 66.2 139 34.5
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 4.1e-09 65.1 135 33.3
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 4.1e-09 65.1 142 31.7
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 5.3e-09 64.7 64 50.0
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 6.9e-09 64.3 128 33.6
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 6.9e-09 64.3 130 33.8
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 6.9e-09 64.3 118 35.6
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 9.1e-09 63.9 139 35.3
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 9.1e-09 63.9 138 34.1
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 9.1e-09 63.9 147 32.0
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 9.1e-09 63.9 136 36.0
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.2e-08 63.5 153 31.4
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-08 63.5 58 48.3
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-08 63.5 58 48.3
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.5e-08 63.2 130 33.8
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.5e-08 63.2 155 32.9
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.0e-08 62.8 128 33.6
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.0e-08 62.8 135 35.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.6e-08 62.4 144 31.9
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 2.6e-08 62.4 145 33.1
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.6e-08 62.4 130 33.1
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 3.4e-08 62.0 151 31.8
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 4.5e-08 61.6 88 46.6
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 4.5e-08 61.6 52 55.8
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 4.5e-08 61.6 143 33.6
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 4.5e-08 61.6 136 33.1
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.5e-08 61.6 132 35.6
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.0e-07 60.5 142 34.5
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.0e-07 60.5 145 29.7
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.0e-07 60.5 154 33.1
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.7e-07 59.7 126 34.1
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 2.2e-07 59.3 128 34.4
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 2.9e-07 58.9 121 33.1
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 2.9e-07 58.9 66 45.5
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 2.9e-07 58.9 143 30.8
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 2.9e-07 58.9 143 30.8
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 3.8e-07 58.5 100 33.0
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 5.0e-07 58.2 134 33.6
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 6.5e-07 57.8 127 31.5
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 8.5e-07 57.4 134 32.8
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 8.5e-07 57.4 141 29.1
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.1e-06 57.0 40 67.5
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.1e-06 57.0 50 50.0
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.1e-06 57.0 141 29.1
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 2.5e-06 55.8 148 29.1
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.2e-06 55.5 134 32.1
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.2e-06 55.1 44 56.8
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 4.2e-06 55.1 101 33.7
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 4.2e-06 55.1 134 32.1
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 5.5e-06 54.7 105 31.4
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 5.5e-06 54.7 50 48.0
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 7.2e-06 54.3 147 32.0
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 7.2e-06 54.3 116 35.3
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 7.2e-06 54.3 150 30.0


User provided reference genes

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