Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 2.8e-60 235.3 141 100.0
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 6.9e-59 230.7 141 92.9
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 1.3e-57 226.5 141 96.5
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 5.4e-56 221.1 122 99.2
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 1.6e-55 219.5 122 99.2
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 3.9e-54 214.9 122 95.9
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 2.1e-47 192.6 142 76.8
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 4.3e-45 184.9 142 78.2
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 2.1e-44 182.6 147 79.6
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 2.8e-44 182.2 145 79.3
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 4.8e-44 181.4 141 80.9
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 8.1e-44 180.6 123 81.3
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 6.9e-43 177.6 149 77.9
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 1.9e-37 159.5 140 75.7
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 3.1e-27 125.6 123 61.8
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 1.7e-20 103.2 147 43.5
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 4.8e-20 101.7 162 49.4
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.8e-19 99.8 143 47.6
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.8e-19 99.8 143 47.6
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 4.1e-19 98.6 124 50.0
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 2.0e-18 96.3 123 48.0
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 3.4e-18 95.5 124 50.0
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 3.4e-18 95.5 126 50.0
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 5.9e-18 94.7 144 41.0
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 1.0e-17 94.0 141 46.1
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 1.0e-17 94.0 146 42.5
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 1.7e-17 93.2 141 45.4
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 2.2e-17 92.8 140 48.6
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 2.2e-17 92.8 146 44.5
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 2.2e-17 92.8 141 45.4
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 2.9e-17 92.4 127 42.5
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 2.9e-17 92.4 141 44.7
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 3.8e-17 92.0 122 45.1
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 8.5e-17 90.9 146 44.5
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 8.5e-17 90.9 143 46.2
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 1.1e-16 90.5 139 43.2
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 1.4e-16 90.1 126 44.4
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 1.4e-16 90.1 145 42.1
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.5e-16 89.4 143 42.7
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 4.2e-16 88.6 122 41.8
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 5.5e-16 88.2 126 42.1
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 5.5e-16 88.2 144 40.3
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 7.2e-16 87.8 122 42.6
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 7.2e-16 87.8 124 43.5
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 7.2e-16 87.8 124 43.5
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 9.4e-16 87.4 125 47.2
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 9.4e-16 87.4 122 41.8
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 9.4e-16 87.4 132 43.2
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.2e-15 87.0 122 41.8
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 1.2e-15 87.0 132 42.4
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 2.1e-15 86.3 134 44.0
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 2.1e-15 86.3 124 44.4
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 2.1e-15 86.3 132 42.4
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 2.7e-15 85.9 165 37.6
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 2.7e-15 85.9 145 42.1
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 2.7e-15 85.9 141 41.1
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 2.7e-15 85.9 115 49.6
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 3.6e-15 85.5 124 44.4
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 4.7e-15 85.1 152 42.1
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 6.1e-15 84.7 128 45.3
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 6.1e-15 84.7 125 44.0
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 6.1e-15 84.7 124 41.1
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 7.9e-15 84.3 129 44.2
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 1.0e-14 84.0 122 44.3
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 1.0e-14 84.0 124 44.4
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 1.4e-14 83.6 120 41.7
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 1.4e-14 83.6 139 39.6
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 1.4e-14 83.6 126 41.3
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 1.8e-14 83.2 122 42.6
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 1.8e-14 83.2 123 44.7
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.3e-14 82.8 122 44.3
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 3.0e-14 82.4 109 43.1
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 3.0e-14 82.4 145 36.6
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 3.9e-14 82.0 143 38.5
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 3.9e-14 82.0 121 47.1
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 3.9e-14 82.0 143 42.0
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 5.2e-14 81.6 140 41.4
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 5.2e-14 81.6 118 44.9
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 5.2e-14 81.6 143 40.6
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 6.7e-14 81.3 133 43.6
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 8.8e-14 80.9 148 39.9
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 1.1e-13 80.5 146 39.0
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 1.5e-13 80.1 127 40.9
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 2.0e-13 79.7 128 43.0
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 2.6e-13 79.3 123 43.9
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 4.4e-13 78.6 139 38.1
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 4.4e-13 78.6 145 39.3
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 5.7e-13 78.2 126 43.7
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 5.7e-13 78.2 124 41.1
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 1.7e-12 76.6 142 38.0
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 2.2e-12 76.3 113 40.7
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 2.8e-12 75.9 152 40.1
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 4.8e-12 75.1 152 39.5
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 8.2e-12 74.3 108 38.9
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 1.1e-11 73.9 147 38.8
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 1.8e-11 73.2 88 46.6
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 3.1e-11 72.4 106 41.5
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.0e-09 67.4 122 41.0
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 2.2e-09 66.2 121 39.7
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 2.9e-09 65.9 113 37.2
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 6.5e-09 64.7 107 38.3
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 8.5e-09 64.3 88 44.3
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 8.5e-09 64.3 110 41.8
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 2.5e-08 62.8 116 36.2
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 7.2e-08 61.2 87 42.5
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 2.1e-07 59.7 104 32.7
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 4.7e-07 58.5 78 44.9
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 8.0e-07 57.8 139 32.4


User provided reference genes

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