Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 2.9e-38 161.4 79 100.0
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 2.9e-38 161.4 79 100.0
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 2.9e-38 161.4 79 100.0
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 6.4e-38 160.2 79 98.7
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 3.2e-37 157.9 79 96.2
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.2e-36 156.0 79 94.9
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.6e-28 129.0 78 78.2
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 5.1e-27 124.0 65 90.8
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 6.6e-27 123.6 65 90.8
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.5e-26 122.5 77 71.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 72.2
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 5.6e-26 120.6 77 70.1
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 67.1
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.8e-24 115.5 77 67.5
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 64.6
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 64.6
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 65.8
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 5.2e-24 114.0 79 64.6
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 9.0e-24 113.2 76 67.1
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 62.0
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 63.2
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 65.8
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 77 67.5
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 7.6e-23 110.2 80 65.0
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 7.6e-23 110.2 80 65.0
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 7.6e-23 110.2 75 65.3
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 9.9e-23 109.8 79 60.8
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 9.9e-23 109.8 75 65.3
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 63.2
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 62.0
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 62.0
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 60.8
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 59.5
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 64.5
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 63.3
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 65.8
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 64.6
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 60.8
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 59.5
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.8e-22 107.8 79 63.3
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 4.9e-22 107.5 76 61.8
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 62.0
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 6.4e-22 107.1 79 63.3
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 6.4e-22 107.1 76 61.8
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 6.4e-22 107.1 76 61.8
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 8.4e-22 106.7 76 61.8
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 59.5
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 8.4e-22 106.7 76 63.2
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.1e-21 106.3 76 64.5
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 59.5
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 59.5
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.1e-21 106.3 76 61.8
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.4e-21 105.9 77 59.7
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 59.5
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 58.2
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 58.2
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 3.2e-21 104.8 76 60.5
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 3.2e-21 104.8 75 58.7
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 4.2e-21 104.4 76 64.5
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.2e-21 104.4 76 59.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 4.2e-21 104.4 80 62.5
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 60.8
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 60.8
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 7.1e-21 103.6 79 58.2
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 7.1e-21 103.6 79 60.8
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 9.3e-21 103.2 76 60.5
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.2e-20 102.8 76 60.5
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.2e-20 102.8 76 57.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-20 102.8 76 60.5
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 1.6e-20 102.4 76 57.9
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.1e-20 102.1 77 61.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.1e-20 102.1 77 61.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.1e-20 102.1 77 61.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.1e-20 102.1 77 61.0
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 2.1e-20 102.1 79 60.8
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.1e-20 102.1 79 58.2
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.7e-20 101.7 79 59.5
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.6e-20 100.9 76 59.2
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 6.0e-20 100.5 79 57.0
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 6.0e-20 100.5 79 53.2
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 7.8e-20 100.1 79 55.7
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 7.8e-20 100.1 75 56.0
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 7.8e-20 100.1 79 57.0
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 7.8e-20 100.1 76 57.9
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.0e-19 99.8 79 59.5
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.0e-19 99.8 76 57.9
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.0e-19 99.8 79 58.2
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.3e-19 99.4 79 57.0
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.3e-19 99.4 79 59.5
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.7e-19 99.0 79 55.7
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.7e-19 99.0 66 65.2
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.3e-19 98.6 79 55.7
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 2.3e-19 98.6 79 58.2
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.0e-19 98.2 76 56.6
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.9e-19 97.8 73 60.3
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.9e-19 97.8 73 60.3
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.9e-19 97.8 70 60.0
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.9e-19 97.8 70 60.0
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 3.9e-19 97.8 76 55.3
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 3.9e-19 97.8 76 55.3
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 5.1e-19 97.4 76 57.9
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.1e-19 97.4 86 55.8
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 8.7e-19 96.7 76 56.6
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.5e-18 95.1 77 57.1
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.5e-18 95.1 72 59.7
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.5e-18 95.1 112 46.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.5e-18 95.1 79 54.4
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 5.6e-18 94.0 76 55.3
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 5.6e-18 94.0 101 46.5
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 7.3e-18 93.6 79 51.9
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 9.6e-18 93.2 79 53.2
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.3e-17 92.8 79 53.2
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.1e-17 92.0 66 59.1
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.1e-17 92.0 79 54.4
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 2.8e-17 91.7 55 72.7
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 2.8e-17 91.7 79 53.2
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 4.8e-17 90.9 63 63.5
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.1e-16 89.7 76 52.6
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.1e-16 89.7 79 53.2
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.8e-16 89.0 62 62.9
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.8e-16 89.0 72 55.6
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.1e-16 88.2 63 60.3
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.0e-16 87.8 60 61.7
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 5.3e-16 87.4 73 54.8
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 5.3e-16 87.4 65 55.4
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.2e-15 86.3 60 60.0
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.2e-15 86.3 56 67.9
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.6e-15 85.1 60 58.3
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.5e-15 84.3 63 57.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 4.5e-15 84.3 55 67.3
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 5.8e-15 84.0 59 61.0
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 5.8e-15 84.0 58 62.1
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.3e-14 82.8 79 50.6
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.9e-14 81.6 61 52.5
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 3.8e-14 81.3 57 64.9
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 8.4e-14 80.1 79 45.6
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.1e-13 79.7 67 52.2
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 4.2e-13 77.8 59 54.2
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.1e-12 75.5 52 63.5
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.5e-10 68.6 66 45.5
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.6e-10 67.4 68 45.6
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 7.4e-10 67.0 71 45.1
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.4e-08 62.0 46 58.7
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 5.3e-08 60.8 56 42.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.9e-06 55.1 74 35.1


User provided reference genes

Program Settings