Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50812 Brassica carinata HOM05D006891 ORTHO05D008671 5.8e-167 590.9 314 100.0
C01p20480 Brassica napus HOM05D006891 ORTHO05D008671 1.7e-166 589.3 314 99.7
BolC1t01979H Brassica oleracea HOM05D006891 ORTHO05D008671 1.7e-166 589.3 314 99.7
BraA01t01588Z Brassica rapa HOM05D006891 ORTHO05D008671 3.2e-165 585.1 314 98.7
A01p16330 Brassica napus HOM05D006891 ORTHO05D008671 7.1e-165 583.9 314 98.7
BcaNung03997 Brassica carinata HOM05D006891 ORTHO05D008671 1.1e-162 576.6 314 96.8
Thhalv10025780m.g Eutrema salsugineum HOM05D006891 ORTHO05D008671 4.6e-156 554.7 314 93.6
Sp7g23060 Schrenkiella parvula HOM05D006891 ORTHO05D008671 8.7e-155 550.4 314 92.0
C07p53960 Brassica napus HOM05D006891 ORTHO05D008671 2.8e-153 545.4 314 92.0
BraA03t14640Z Brassica rapa HOM05D006891 ORTHO05D008671 4.8e-153 544.7 314 91.7
A03p55730 Brassica napus HOM05D006891 ORTHO05D008671 3.1e-152 542.0 314 91.7
AT4G25080 Arabidopsis thaliana HOM05D006891 ORTHO05D008671 6.9e-152 540.8 314 91.4
AL7G28070 Arabidopsis lyrata HOM05D006891 ORTHO05D008671 2.6e-151 538.9 314 90.8
CARHR232470 Cardamine hirsuta HOM05D006891 ORTHO05D008671 1.0e-150 537.0 314 90.8
Carub.0007s1596 Capsella rubella HOM05D006891 ORTHO05D008671 1.9e-149 532.7 314 89.8
BolC7t45886H Brassica oleracea HOM05D006891 ORTHO05D008671 5.5e-149 531.2 314 90.4
Aa31LG7G10590 Aethionema arabicum HOM05D006891 ORTHO05D008671 1.0e-142 510.4 314 86.3
COL.COLO4_37249 Corchorus olitorius HOM05D006891 ORTHO05D008671 5.5e-125 451.4 310 74.5
Cpa.g.sc13.164 Carica papaya HOM05D006891 ORTHO05D008671 4.7e-124 448.4 325 72.9
TWI39G1149 Tripterygium wilfordii HOM05D006891 ORTHO05D008671 1.0e-123 447.2 324 73.5
Gorai.001G054400 Gossypium raimondii HOM05D006891 ORTHO05D008671 2.0e-122 443.0 312 73.1
Gohir.A07G047000 Gossypium hirsutum HOM05D006891 ORTHO05D008671 9.7e-122 440.7 312 72.8
Gohir.D07G051300 Gossypium hirsutum HOM05D006891 ORTHO05D008671 1.3e-121 440.3 312 72.4
Thecc.03G139800 Theobroma cacao HOM05D006891 ORTHO05D008671 2.2e-121 439.5 278 79.1
PGR142G3013 Punica granatum HOM05D006891 ORTHO05D008671 3.7e-121 438.7 288 77.1
Duzib205G0665 Durio zibethinus HOM05D006891 ORTHO05D008671 4.8e-121 438.3 312 73.1
Cfa018711 Carpinus fangiana HOM05D006891 ORTHO05D008671 6.3e-121 438.0 273 79.5
Haze_07102 Corylus avellana HOM05D006891 ORTHO05D008671 6.3e-121 438.0 273 79.9
Lalb_Chr13g0296991 Lupinus albus HOM05D006891 ORTHO05D008671 2.6e-119 432.6 280 78.9
Ciclev10032123m.g Citrus clementina HOM05D006891 ORTHO05D008671 3.5e-119 432.2 277 77.6
CsaV3_1G000080 Cucumis sativus L. HOM05D006891 ORTHO05D008671 4.5e-119 431.8 268 78.7
MELO3C026160.2 Cucumis melo HOM05D006891 ORTHO05D008671 5.9e-119 431.4 273 78.0
FvH4_5g09430 Fragaria vesca HOM05D006891 ORTHO05D008671 1.0e-118 430.6 271 80.4
FAN18G0906 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.0e-118 430.6 271 80.4
THA.LOC104811559 Tarenaya hassleriana HOM05D006891 ORTHO05D008671 1.0e-118 430.6 317 74.4
FAN04G1325 Fragaria x ananassa HOM05D006891 ORTHO05D008671 2.2e-118 429.5 271 80.1
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 2.9e-118 429.1 270 79.6
TAR475G0005 Trochodendron aralioides HOM05D006891 ORTHO05D008671 2.9e-118 429.1 310 71.0
Glyma.08G007900 Glycine max HOM05D006891 ORTHO05D008671 5.0e-118 428.3 330 70.3
VMungo0251G3529 Vigna mungo HOM05D006891 ORTHO05D008671 5.0e-118 428.3 318 72.6
Aqoxy5G03144 Aquilegia oxysepala HOM05D006891 ORTHO05D008671 8.5e-118 427.6 294 73.8
ClCG06G018350 Citrullus lanatus HOM05D006891 ORTHO05D008671 8.5e-118 427.6 273 76.6
Actinidia18305 Actinidia chinensis HOM05D006891 ORTHO05D008671 1.1e-117 427.2 272 78.7
MBI04_g35563_MAGBIO Magnolia biondii HOM05D006891 ORTHO05D008671 1.1e-117 427.2 300 73.7
Nitab4.5_0000976g0010 Nicotiana tabacum HOM05D006891 ORTHO05D008671 1.9e-117 426.4 283 76.0
Glyma.05G200500 Glycine max HOM05D006891 ORTHO05D008671 2.5e-117 426.0 316 71.5
Phvul.002G281900 Phaseolus vulgaris HOM05D006891 ORTHO05D008671 3.2e-117 425.6 318 71.1
Eucgr.G02043 Eucalyptus grandis HOM05D006891 ORTHO05D008671 4.2e-117 425.2 315 69.5
Lj9C486T5 Lonicera japonica HOM05D006891 ORTHO05D008671 5.5e-117 424.9 283 77.0
MD14G1147900 Malus domestica HOM05D006891 ORTHO05D008671 5.5e-117 424.9 272 77.6
Sed0026594 Sechium edule HOM05D006891 ORTHO05D008671 9.4e-117 424.1 277 76.5
Dinv13725 Davidia involucrata HOM05D006891 ORTHO05D008671 1.2e-116 423.7 298 73.8
Prupe.5G142500 Prunus persica HOM05D006891 ORTHO05D008671 1.2e-116 423.7 305 70.8
CAN.G843.14 Capsicum annuum HOM05D006891 ORTHO05D008671 2.1e-116 422.9 285 75.4
MD06G1131500 Malus domestica HOM05D006891 ORTHO05D008671 2.1e-116 422.9 299 72.2
Atru.chr6.1910 Acer truncatum HOM05D006891 ORTHO05D008671 3.6e-116 422.2 319 69.0
CiPaw.12G001000 Carya illinoinensis HOM05D006891 ORTHO05D008671 3.6e-116 422.2 326 69.0
Migut.D01186 Erythranthe guttata HOM05D006891 ORTHO05D008671 3.6e-116 422.2 297 72.4
Lsat_1_v5_gn_4_84561 Lactuca sativa HOM05D006891 ORTHO05D008671 4.7e-116 421.8 305 71.1
Sabra12G0078900 Salix brachista HOM05D006891 ORTHO05D008671 4.7e-116 421.8 317 69.4
Solyc03g118240.4 Solanum lycopersicum HOM05D006891 ORTHO05D008671 6.1e-116 421.4 279 76.7
DCAR_025652 Daucus carota HOM05D006891 ORTHO05D008671 8.0e-116 421.0 312 71.2
RcHm_v2.0_Chr7g0188761 Rosa chinensis HOM05D006891 ORTHO05D008671 8.0e-116 421.0 271 78.6
PGSC0003DMG400014243 Solanum tuberosum HOM05D006891 ORTHO05D008671 8.0e-116 421.0 303 72.6
CSS0004907 Camellia sinensis var. sinensis HOM05D006891 ORTHO05D008671 1.0e-115 420.6 319 68.7
SGA_v2.0_scaffold40G15677 Striga asiatica HOM05D006891 ORTHO05D008671 1.4e-115 420.2 280 76.1
Sopen03g037150 Solanum pennellii HOM05D006891 ORTHO05D008671 3.0e-115 419.1 294 73.8
QL10p000565 Quercus lobata HOM05D006891 ORTHO05D008671 4.0e-115 418.7 323 69.0
Rhsim08G0196800 Rhododendron simsii HOM05D006891 ORTHO05D008671 6.8e-115 417.9 274 76.3
Lj4g0024376 Lotus japonicus HOM05D006891 ORTHO05D008671 1.2e-114 417.2 322 69.3
HanXRQChr11g0350211 Helianthus annuus HOM05D006891 ORTHO05D008671 1.5e-114 416.8 281 75.1
vmacro19179 Vaccinium macrocarpon HOM05D006891 ORTHO05D008671 1.5e-114 416.8 319 68.0
MSTRG.4642 Avicennia marina HOM05D006891 ORTHO05D008671 2.0e-114 416.4 297 71.7
Peaxi162Scf00314g00625 Petunia axillaris HOM05D006891 ORTHO05D008671 2.6e-114 416.0 266 78.2
Sc04g0000210 Simmondsia chinensis HOM05D006891 ORTHO05D008671 2.6e-114 416.0 323 68.7
PSO017G2699 Papaver somniferum HOM05D006891 ORTHO05D008671 4.4e-114 415.2 284 73.2
Nn3g16285 Nelumbo nucifera HOM05D006891 ORTHO05D008671 5.7e-114 414.8 307 69.4
PSO478G3300 Papaver somniferum HOM05D006891 ORTHO05D008671 1.3e-113 413.7 284 73.2
HanXRQChr09g0273851 Helianthus annuus HOM05D006891 ORTHO05D008671 1.7e-113 413.3 311 70.1
arahy.Tifrunner.gnm1.ann1.5G0V08 Arachis hypogaea HOM05D006891 ORTHO05D008671 8.3e-113 411.0 285 74.0
CDE11G0769 Ceratophyllum demersum HOM05D006891 ORTHO05D008671 1.1e-112 410.6 279 73.5
Manes.06G126400 Manihot esculenta HOM05D006891 ORTHO05D008671 3.5e-111 405.6 316 67.7
ECA232G2217 Erigeron canadensis HOM05D006891 ORTHO05D008671 6.1e-108 394.8 314 65.6
TPR.G12963 Trifolium pratense HOM05D006891 ORTHO05D008671 6.1e-108 394.8 278 73.4
CANSAT56G0245 Cannabis sativa HOM05D006891 ORTHO05D008671 8.0e-108 394.4 231 81.8
CANSAT56G1732 Cannabis sativa HOM05D006891 ORTHO05D008671 8.0e-108 394.4 231 81.8
Psat7g039320 Pisum sativum HOM05D006891 ORTHO05D008671 8.8e-107 391.0 300 67.7
Medtr8g100120 Medicago truncatula HOM05D006891 ORTHO05D008671 1.2e-106 390.6 324 66.0
AUR62009532 Chenopodium quinoa HOM05D006891 ORTHO05D008671 2.0e-106 389.8 258 75.2
HPP92_020658 Vanilla planifolia HOM05D006891 ORTHO05D008671 5.4e-104 381.7 272 69.9
arahy.Tifrunner.gnm1.ann1.0QZ944 Arachis hypogaea HOM05D006891 ORTHO05D008671 3.5e-103 379.0 285 70.5
unitig_736.g22830 Utricularia gibba HOM05D002810 ORTHO05D003983 8.6e-102 374.4 284 69.0
Potri.012G106600 Populus trichocarpa HOM05D006891 ORTHO05D008671 3.6e-100 369.0 228 78.5
ATR0579G076 Amborella trichopoda HOM05D006891 ORTHO05D008671 4.7e-100 368.6 235 75.3
SEGI_33809 Sequoiadendron giganteum HOM05D006891 ORTHO05D008671 4.0e-99 365.5 298 64.1
GSVIVG01008643001 Vitis vinifera HOM05D006891 ORTHO05D008671 8.9e-99 364.4 307 63.5
SalBow1G6359 Salvia bowleyana HOM05D006891 ORTHO05D008671 2.0e-98 363.2 286 66.8
Hund02505 Selenicereus undatus HOM05D006891 ORTHO05D008671 1.4e-96 357.1 231 75.8
AUR62041695 Chenopodium quinoa HOM05D006891 ORTHO05D008671 3.2e-96 355.9 289 65.1
AagrBONN_evm.TU.Sc2ySwM_368.2875 Anthoceros agrestis HOM05D006891 ORTHO05D008671 1.1e-93 347.4 300 61.3
SMO115G0098 Selaginella moellendorffii HOM05D006891 ORTHO05D008671 5.6e-93 345.1 308 60.1
Pp3c12_24890 Physcomitrium patens HOM05D006891 ORTHO05D008671 8.9e-91 337.8 277 63.2
Ah.11g046860 Amaranthus hybridus HOM05D006891 ORTHO05D008671 4.4e-90 335.5 207 80.7
Mapoly0112s0034 Marchantia polymorpha HOM05D006891 ORTHO05D008671 6.4e-89 331.6 310 57.4
Cre12.g498550 Chlamydomonas reinhardtii HOM05D006891 ORTHO05D008671 6.6e-86 321.6 266 60.2
Zm00001eb269720 Zea mays HOM05D006891 ORTHO05D008671 9.5e-85 317.8 246 65.0
EL10Ac5g11293 Beta vulgaris HOM05D006891 ORTHO05D008671 1.5e-82 310.5 328 54.9
MCO11G158 Micromonas commoda HOM05D006891 ORTHO05D008671 2.9e-73 279.6 274 54.4
Ca_16812_v3 Cicer arietinum L. HOM05D006891 ORTHO05D008671 3.9e-62 242.7 223 63.2
unitig_899.g14822 Utricularia gibba HOM05D002810 ORTHO05D003983 3.6e-60 236.1 297 49.5
AUR62044303 Chenopodium quinoa HOM05D006891 ORTHO05D008671 5.3e-59 232.3 226 56.6
Potri.015G105702 Populus trichocarpa HOM05D006891 ORTHO05D008671 7.1e-56 221.9 230 56.1
Hma1.2p1_0577F.1_g182340 Hydrangea macrophylla HOM05D006891 ORTHO05D008671 1.6e-55 220.7 178 68.5
Dinv23219 Davidia involucrata HOM05D006891 ORTHO05D008671 2.4e-48 196.8 143 72.0
Os06g0132400 Oryza sativa ssp. japonica HOM05D006891 ORTHO05D008671 5.5e-40 169.1 104 72.1
SGA_v2.0_scaffold377G50317 Striga asiatica HOM05D006891 ORTHO05D008671 9.7e-21 105.1 69 69.6
CBR_g32078 Chara braunii HOM05D006891 ORTHO05D008671 2.2e-17 94.0 120 45.8
BraA03t14643Z Brassica rapa HOM05D006891 ORTHO05D033303 1.0e-09 68.6 64 64.1
Eucgr.G02044 Eucalyptus grandis HOM05D006891 ORTHO05D008671 3.8e-09 66.6 41 73.2
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 8.0e-07 58.9 125 30.4


User provided reference genes

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