Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 6.0e-174 614.0 293 100.0
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.4e-159 566.2 271 99.3
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.9e-159 565.8 271 99.3
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 2.7e-158 562.0 271 98.2
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.0e-157 560.1 271 98.2
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.1e-156 556.6 271 97.0
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.8e-149 532.7 271 93.4
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 4.5e-137 491.5 271 87.1
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 5.9e-137 491.1 270 86.3
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.3e-136 490.0 271 86.7
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 6.5e-136 487.6 271 86.7
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 9.4e-135 483.8 271 85.2
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 2.3e-133 479.2 271 84.9
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 1.3e-131 473.4 269 84.0
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.8e-130 469.5 271 80.4
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 6.9e-130 467.6 271 80.4
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 3.4e-129 465.3 270 79.6
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 7.7e-129 464.2 296 77.7
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 7.7e-129 464.2 272 80.9
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 6.5e-128 461.1 271 78.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.7e-126 455.7 271 78.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.9e-126 454.1 266 78.6
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 5.1e-125 451.4 274 82.1
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 5.1e-125 451.4 271 77.9
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.1e-125 451.4 270 78.5
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 8.8e-125 450.7 268 78.7
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 8.8e-125 450.7 271 76.4
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.6e-124 449.1 266 77.4
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 5.7e-124 448.0 271 77.9
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 7.4e-124 447.6 266 75.6
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.3e-123 446.8 265 78.1
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.3e-123 446.8 268 77.2
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.7e-123 446.4 271 77.1
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.2e-123 446.0 262 79.0
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 3.7e-123 445.3 271 79.7
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 3.7e-123 445.3 271 77.1
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 6.3e-123 444.5 255 79.6
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 6.3e-123 444.5 271 75.6
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 8.2e-123 444.1 268 75.4
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.4e-122 443.4 271 76.4
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.8e-122 443.0 260 77.3
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.8e-122 443.0 265 75.8
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 2.4e-122 442.6 257 80.5
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.1e-122 442.2 268 76.5
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 4.1e-122 441.8 282 73.4
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 4.1e-122 441.8 267 76.8
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 7.0e-122 441.0 268 75.7
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 9.1e-122 440.7 255 79.6
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.2e-121 440.3 271 76.4
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 2.0e-121 439.5 255 78.8
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.6e-121 439.1 262 76.3
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.7e-121 437.6 274 76.6
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.0e-120 437.2 266 77.8
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.7e-120 436.4 274 76.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.7e-120 436.4 258 79.1
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 2.2e-120 436.0 271 75.3
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.9e-120 435.6 268 74.3
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.9e-120 435.6 268 74.3
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.8e-120 435.3 244 82.0
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 6.5e-120 434.5 264 75.8
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 6.5e-120 434.5 271 74.9
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 8.5e-120 434.1 254 76.4
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 8.5e-120 434.1 274 75.9
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.9e-119 433.0 271 76.0
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.9e-119 433.0 271 76.0
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.5e-119 432.6 261 75.1
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.2e-119 432.2 271 74.5
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 3.2e-119 432.2 268 75.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.2e-119 431.8 258 78.3
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 4.2e-119 431.8 270 75.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 7.2e-119 431.0 270 75.2
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 1.2e-118 430.3 268 74.6
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.6e-118 429.9 269 74.7
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 8.0e-118 427.6 248 79.4
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 8.0e-118 427.6 271 75.3
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.0e-117 427.2 271 74.9
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 5.2e-117 424.9 271 75.6
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.0e-116 422.9 267 74.2
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 2.6e-116 422.5 266 74.4
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 3.3e-116 422.2 259 76.1
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 5.7e-116 421.4 269 74.0
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.3e-115 420.2 256 74.6
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.7e-115 419.9 264 75.8
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 8.2e-115 417.5 271 71.6
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 8.2e-115 417.5 258 74.4
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.1e-114 417.2 273 73.3
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-114 417.2 241 80.9
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.4e-114 416.8 261 72.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.4e-114 416.0 276 72.1
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 3.1e-114 415.6 263 74.1
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.1e-114 415.2 273 74.0
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.0e-113 412.9 273 73.3
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.3e-112 410.2 281 70.5
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.9e-112 409.1 270 73.7
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 6.5e-112 407.9 221 86.4
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 3.2e-111 405.6 261 71.6
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.2e-111 405.6 252 73.4
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.7e-110 401.7 291 65.3
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.3e-109 399.4 289 65.7
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.3e-109 399.4 266 71.1
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.2e-108 397.1 288 66.7
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.0e-108 396.4 231 76.6
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.6e-108 396.0 271 70.5
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.4e-106 389.4 274 68.2
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 5.9e-105 384.8 261 70.1
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.0e-104 384.0 271 69.4
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.3e-104 383.6 230 76.1
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.5e-103 380.2 233 72.5
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 4.2e-103 378.6 220 77.7
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.8e-101 373.2 291 63.2
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 4.0e-101 372.1 233 70.8
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.8e-99 365.9 211 78.7
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 6.3e-99 364.8 238 67.6
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-98 364.0 236 72.0
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.7e-97 359.4 234 65.8
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.0e-96 357.5 244 63.5
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.9e-95 353.2 237 65.8
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 1.6e-94 350.1 219 68.0
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.2e-89 334.0 221 70.1
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 7.8e-89 331.3 262 62.2
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 7.8e-89 331.3 194 75.8
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.0e-88 328.6 308 54.9
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.8e-86 322.8 232 66.4
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.2e-84 317.4 157 98.1
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 3.7e-83 312.4 164 83.5
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.4e-82 309.7 338 50.0
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.2e-81 307.4 181 79.0
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 6.0e-81 305.1 291 55.3
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.3e-79 298.1 200 67.5
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 6.8e-77 291.6 218 56.4
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 7.3e-71 271.6 163 74.8
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.1e-62 243.4 162 71.0
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.1e-61 239.6 138 78.3
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.4e-58 229.9 199 57.8
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.2e-58 228.0 213 56.3
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.7e-49 199.9 123 76.4
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 6.2e-46 188.7 123 71.5
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.4e-28 129.8 107 62.6
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.4e-26 124.4 79 75.9
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 9.3e-26 121.7 72 79.2
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.7e-25 120.2 81 67.9
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.7e-24 115.5 66 69.7
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 4.3e-23 112.8 66 78.8
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.6e-22 110.9 65 72.3
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 8.5e-19 98.6 90 58.9
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.4e-18 97.8 61 78.7
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 3.6e-17 93.2 86 60.5
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.0e-16 91.7 52 75.0
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 2.0e-15 87.4 73 57.5
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 5.3e-13 79.3 60 70.0
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 5.9e-12 75.9 70 57.1
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.3e-11 74.7 76 51.3
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.5e-11 72.4 55 61.8
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.2e-09 68.2 98 38.8
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.4e-08 64.7 67 50.7
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 1.5e-07 61.2 159 29.6


User provided reference genes

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