Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 0.0e+00 1199.5 658 100.0
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 0.0e+00 1121.7 665 92.0
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 0.0e+00 1118.6 668 93.1
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 0.0e+00 1106.7 668 92.2
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 0.0e+00 1105.9 668 92.2
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 3.2e-252 875.2 723 72.1
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 2.8e-248 862.1 714 73.5
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 3.7e-240 835.1 730 69.5
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 5.4e-239 831.2 715 71.0
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 5.4e-239 831.2 715 71.0
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 3.3e-236 822.0 728 70.2
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 4.7e-235 818.1 724 68.9
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 8.3e-232 807.4 710 68.7
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 8.3e-232 807.4 710 68.7
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 1.8e-226 789.6 732 66.1
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 7.0e-223 777.7 725 69.4
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 2.7e-190 669.5 748 59.0
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.8e-155 553.1 762 50.8
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.2e-153 547.7 758 50.0
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.2e-81 308.5 769 37.2
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 2.5e-79 300.8 759 36.1
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 1.6e-78 298.1 835 34.9
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.4e-77 295.0 753 35.2
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 1.6e-70 271.6 776 34.4
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 3.1e-69 267.3 792 34.8
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.5e-68 265.0 776 33.0
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 2.6e-68 264.2 784 34.3
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 4.5e-68 263.5 779 33.5
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 4.9e-67 260.0 769 34.1
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 6.4e-67 259.6 779 33.2
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.1e-66 258.8 763 34.3
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 4.2e-66 256.9 762 32.9
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 9.3e-66 255.8 774 33.5
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 4.3e-63 246.9 757 34.1
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 4.8e-62 243.4 786 34.1
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 6.2e-62 243.0 763 33.0
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 4.0e-61 240.4 771 33.6
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 1.5e-60 238.4 782 35.4
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 3.2e-58 230.7 764 32.5
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 7.1e-58 229.6 759 32.0
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.0e-56 225.7 780 32.1
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.8e-56 224.9 754 32.0
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 2.3e-56 224.6 742 32.7
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 6.7e-56 223.0 780 33.6
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.1e-55 222.2 762 31.9
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.3e-55 220.3 763 31.5
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 5.7e-55 219.9 831 30.9
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 4.8e-54 216.9 779 31.6
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.1e-53 215.7 785 32.9
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 9.0e-53 212.6 787 33.5
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.5e-52 211.8 783 33.1
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 4.5e-52 210.3 784 33.3
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.7e-51 208.4 785 32.7
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 6.5e-51 206.5 779 32.9
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 6.5e-51 206.5 791 31.9
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.1e-50 205.7 756 30.8
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.5e-50 204.5 763 31.8
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 2.5e-50 204.5 759 29.9
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 1.2e-49 202.2 759 30.2
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 1.6e-49 201.8 763 29.4
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 1.6e-49 201.8 763 31.6
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 5.1e-48 196.8 764 28.5
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 2.8e-46 191.0 769 32.0
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.1e-45 189.1 752 29.1
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 5.9e-44 183.3 766 32.0
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.3e-43 182.2 716 29.7
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 2.9e-43 181.0 755 30.5
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 7.2e-42 176.4 807 29.5
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 1.4e-40 172.2 761 30.5
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 3.9e-40 170.6 758 30.2
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 1.1e-39 169.1 796 28.8
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.1e-39 169.1 672 30.7
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 1.5e-39 168.7 623 31.5
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 7.4e-39 166.4 717 28.6
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 1.7e-38 165.2 754 30.1
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 2.8e-38 164.5 756 30.0
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 9.1e-37 159.5 766 27.4
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.0e-36 158.3 896 26.0
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 3.4e-36 157.5 621 31.7
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.1e-34 152.5 763 28.3
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 7.2e-34 149.8 928 25.3
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 1.6e-33 148.7 689 29.8
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.1e-33 148.3 702 29.1
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 3.0e-32 144.4 737 28.6
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.1e-31 142.5 704 28.8
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 2.0e-31 141.7 759 27.8
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 2.2e-30 138.3 707 29.1
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 3.7e-30 137.5 776 28.6
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 3.7e-30 137.5 675 30.1
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 6.3e-30 136.7 743 29.2
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 7.0e-29 133.3 778 28.9
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 9.1e-29 132.9 624 28.4
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 2.0e-28 131.7 676 27.4
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 2.6e-28 131.3 709 26.5
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 5.9e-28 130.2 709 28.2
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.0e-27 129.4 679 28.7
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.5e-26 125.6 778 28.0
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 1.5e-26 125.6 755 27.4
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 2.5e-26 124.8 723 27.0
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 3.2e-26 124.4 726 27.7
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.1e-25 121.7 787 29.2
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.7e-25 121.3 679 28.1
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 6.1e-25 120.2 740 27.2
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 1.8e-24 118.6 779 28.1
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.2e-23 115.9 687 28.2
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 6.3e-22 110.2 311 34.1
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 1.8e-21 108.6 773 26.9
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 3.5e-20 104.4 767 26.7
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.7e-19 102.1 754 25.2
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 2.9e-19 101.3 756 25.8
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 2.1e-17 95.1 571 25.6
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 3.6e-17 94.4 707 27.0
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 5.2e-16 90.5 752 25.5
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 8.8e-16 89.7 746 26.4
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.2e-15 89.4 678 26.3
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 1.2e-15 89.4 652 27.3
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 9.8e-15 86.3 668 26.9
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 4.1e-13 80.9 678 26.1
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 7.7e-12 76.6 663 23.5
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.9e-10 72.0 164 36.0
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 7.2e-10 70.1 546 24.2
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.7e-09 67.4 667 23.1
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 6.1e-09 67.0 670 26.0
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.0e-08 66.2 627 26.2
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 8.8e-08 63.2 671 24.6
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 2.6e-07 61.6 605 25.0


User provided reference genes

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