Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50603 Brassica carinata HOM05D002901 ORTHO05D021841 2.0e-39 165.2 80 100.0
A03p65740 Brassica napus HOM05D002901 ORTHO05D021841 1.7e-38 162.2 80 97.5
BraA03t15625Z Brassica rapa HOM05D002901 ORTHO05D021841 1.7e-38 162.2 80 97.5
BcaC02g12344 Brassica carinata HOM05D002901 ORTHO05D003183 2.2e-14 82.0 147 40.1
C04p04940 Brassica napus HOM05D002901 ORTHO05D003183 2.2e-14 82.0 147 40.1
BolC4t22125H Brassica oleracea HOM05D002901 ORTHO05D003183 2.2e-14 82.0 147 40.1
A05p04170 Brassica napus HOM05D002901 ORTHO05D003183 6.5e-14 80.5 147 39.5
BraA05t19403Z Brassica rapa HOM05D002901 ORTHO05D003183 6.5e-14 80.5 147 39.5
Thhalv10001406m.g Eutrema salsugineum HOM05D002901 ORTHO05D003183 8.5e-14 80.1 147 38.1
BcaB02g08924 Brassica carinata HOM05D002901 ORTHO05D003183 3.2e-13 78.2 147 38.1
Sp4g26110 Schrenkiella parvula HOM05D002901 ORTHO05D003183 4.2e-13 77.8 147 37.4
AL4G42900 Arabidopsis lyrata HOM05D002901 ORTHO05D003183 5.5e-13 77.4 147 38.1
AT2G44020 Arabidopsis thaliana HOM05D002901 ORTHO05D003183 5.5e-13 77.4 147 38.1
Carub.0004s2658 Capsella rubella HOM05D002901 ORTHO05D003183 9.4e-13 76.6 147 36.1
CARHR139180 Cardamine hirsuta HOM05D002901 ORTHO05D003183 9.4e-13 76.6 147 36.7
BcaC09g48848 Brassica carinata HOM05D023491 ORTHO05D021841 4.0e-11 71.2 38 94.7
Aa31LG1G25700 Aethionema arabicum HOM05D002901 ORTHO05D003183 2.0e-10 68.9 147 34.7
THA.LOC104804390 Tarenaya hassleriana HOM05D002901 ORTHO05D003183 2.0e-10 68.9 147 34.7
Lj4g0013449 Lotus japonicus HOM05D002901 ORTHO05D003183 1.7e-09 65.9 147 34.7
Atru.chr13.1879 Acer truncatum HOM05D002901 ORTHO05D003183 3.7e-09 64.7 147 31.3
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 4.8e-09 64.3 147 34.0
arahy.Tifrunner.gnm1.ann1.IVXM4E Arachis hypogaea HOM05D002901 ORTHO05D003183 4.8e-09 64.3 147 34.0
Sabra13G0098800 Salix brachista HOM05D002901 ORTHO05D003183 6.3e-09 63.9 147 30.6
PGR042G2939 Punica granatum HOM05D002901 ORTHO05D003183 8.2e-09 63.5 147 31.3
Lalb_Chr05g0222181 Lupinus albus HOM05D002901 ORTHO05D003183 1.1e-08 63.2 147 32.0
Medtr1g115415 Medicago truncatula HOM05D002901 ORTHO05D003183 1.1e-08 63.2 147 33.3
TPR.G34335 Trifolium pratense HOM05D002901 ORTHO05D003183 1.1e-08 63.2 147 33.3
ECA234G1179 Erigeron canadensis HOM05D000093 ORTHO05D001309 1.4e-08 62.8 148 30.4
CANSAT25G1264 Cannabis sativa HOM05D002901 ORTHO05D003183 1.8e-08 62.4 147 30.6
Eucgr.F02687 Eucalyptus grandis HOM05D002901 ORTHO05D003183 1.8e-08 62.4 147 31.3
Medtr8g105560 Medicago truncatula HOM05D002901 ORTHO05D003183 1.8e-08 62.4 130 38.5
Cpa.g.sc151.12 Carica papaya HOM05D002901 ORTHO05D003183 2.4e-08 62.0 147 32.0
Ca_17273_v3 Cicer arietinum L. HOM05D002901 ORTHO05D003183 2.4e-08 62.0 147 31.3
Potri.013G116700 Populus trichocarpa HOM05D002901 ORTHO05D003183 2.4e-08 62.0 147 29.9
Lalb_Chr16g0387491 Lupinus albus HOM05D002901 ORTHO05D003183 3.1e-08 61.6 147 32.7
Psat7g007760 Pisum sativum HOM05D002901 ORTHO05D003183 3.1e-08 61.6 147 32.7
TWI79G0180 Tripterygium wilfordii HOM05D002901 ORTHO05D003183 3.1e-08 61.6 147 31.3
CiPaw.16G005800 Carya illinoinensis HOM05D002901 ORTHO05D003183 4.1e-08 61.2 147 29.3
Thecc.01G124400 Theobroma cacao HOM05D002901 ORTHO05D003183 5.3e-08 60.8 147 29.3
TAR376G0603 Trochodendron aralioides HOM05D002901 ORTHO05D003183 5.3e-08 60.8 147 29.9
GSVIVG01015207001 Vitis vinifera HOM05D002901 ORTHO05D003183 5.3e-08 60.8 99 41.4
MD07G1031000 Malus domestica HOM05D002901 ORTHO05D003183 7.0e-08 60.5 149 30.9
Prupe.8G049300 Prunus persica HOM05D002901 ORTHO05D003183 7.0e-08 60.5 43 72.1
ECA248G1159 Erigeron canadensis HOM05D002901 ORTHO05D003183 1.2e-07 59.7 147 29.3
Phvul.002G321600 Phaseolus vulgaris HOM05D002901 ORTHO05D003183 1.2e-07 59.7 43 72.1
FvH4_1g27270 Fragaria vesca HOM05D002901 ORTHO05D003183 1.6e-07 59.3 43 69.8
FvH4_1g27350 Fragaria vesca HOM05D002901 ORTHO05D003183 1.6e-07 59.3 43 69.8
FAN19G2769 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.6e-07 59.3 43 69.8
FAN19G2893 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.6e-07 59.3 43 69.8
FAN23G2662 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.6e-07 59.3 43 69.8
Glyma.08G046300 Glycine max HOM05D002901 ORTHO05D003183 1.6e-07 59.3 43 72.1
MBI02_g13010_MAGBIO Magnolia biondii HOM05D002901 ORTHO05D003183 1.6e-07 59.3 147 30.6
Oeu037405.1 Olea europaea HOM05D002901 ORTHO05D003183 1.6e-07 59.3 147 30.6
Aqoxy1G00295 Aquilegia oxysepala HOM05D002901 ORTHO05D003183 2.0e-07 58.9 147 30.6
MSTRG.14895 Avicennia marina HOM05D002901 ORTHO05D003183 2.0e-07 58.9 147 31.3
EL10Ac2g03279 Beta vulgaris HOM05D002901 ORTHO05D003183 2.0e-07 58.9 43 67.4
FAN28G2975 Fragaria x ananassa HOM05D002901 ORTHO05D003183 2.0e-07 58.9 43 69.8
PSO447G0109 Papaver somniferum HOM05D002901 ORTHO05D003183 2.0e-07 58.9 147 29.3
RcHm_v2.0_Chr3g0488701 Rosa chinensis HOM05D002901 ORTHO05D003183 2.0e-07 58.9 43 69.8
COL.COLO4_13997 Corchorus olitorius HOM05D002901 ORTHO05D003183 2.7e-07 58.5 43 65.1
Manes.02G188300 Manihot esculenta HOM05D002901 ORTHO05D003183 2.7e-07 58.5 147 29.9
SGA_v2.0_scaffold95G28735 Striga asiatica HOM05D002901 ORTHO05D003183 2.7e-07 58.5 43 67.4
VMungo0251G0115 Vigna mungo HOM05D002901 ORTHO05D003183 2.7e-07 58.5 43 69.8
ATR0564G477 Amborella trichopoda HOM05D002901 ORTHO05D003183 3.5e-07 58.2 147 28.6
Duzib147G0362 Durio zibethinus HOM05D002901 ORTHO05D003183 3.5e-07 58.2 144 29.9
HanXRQChr09g0245761 Helianthus annuus HOM05D002901 ORTHO05D003183 3.5e-07 58.2 148 29.1
CSS0006169 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 4.5e-07 57.8 64 46.9
Glyma.05G239200 Glycine max HOM05D002901 ORTHO05D003183 4.5e-07 57.8 43 67.4
Lsat_1_v5_gn_4_41901 Lactuca sativa HOM05D002901 ORTHO05D003183 4.5e-07 57.8 43 65.1
Rhsim04G0038200 Rhododendron simsii HOM05D002901 ORTHO05D003183 4.5e-07 57.8 43 62.8
Rhsim06G0087300 Rhododendron simsii HOM05D002901 ORTHO05D003183 4.5e-07 57.8 43 62.8
SalBow4G1505 Salvia bowleyana HOM05D002901 ORTHO05D003183 4.5e-07 57.8 43 62.8
Cfa018219 Carpinus fangiana HOM05D002901 ORTHO05D003183 7.7e-07 57.0 43 65.1
Cc05_g00150 Coffea canephora HOM05D002901 ORTHO05D003183 7.7e-07 57.0 43 62.8
FAN28G2937 Fragaria x ananassa HOM05D002901 ORTHO05D003183 7.7e-07 57.0 43 67.4
Gohir.A02G108506 Gossypium hirsutum HOM05D002901 ORTHO05D003183 7.7e-07 57.0 147 27.9
Gohir.A02G108507 Gossypium hirsutum HOM05D002901 ORTHO05D003183 7.7e-07 57.0 147 27.9
Gohir.D03G069704 Gossypium hirsutum HOM05D002901 ORTHO05D003183 7.7e-07 57.0 147 27.9
Gorai.003G090600 Gossypium raimondii HOM05D002901 ORTHO05D003183 7.7e-07 57.0 147 27.9
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 7.7e-07 57.0 43 65.1
QL07p030484 Quercus lobata HOM05D002901 ORTHO05D003183 7.7e-07 57.0 147 28.6
QL07p031555 Quercus lobata HOM05D002901 ORTHO05D003183 7.7e-07 57.0 147 28.6
Sabra19G0101000 Salix brachista HOM05D002901 ORTHO05D003183 7.7e-07 57.0 140 30.0
Solyc11g017050.1 Solanum lycopersicum HOM05D002901 ORTHO05D003183 7.7e-07 57.0 43 65.1
Sopen11g009040 Solanum pennellii HOM05D002901 ORTHO05D003183 7.7e-07 57.0 43 65.1
PGSC0003DMG400009215 Solanum tuberosum HOM05D002901 ORTHO05D003183 7.7e-07 57.0 43 65.1
Ciclev10000930m.g Citrus clementina HOM05D002901 ORTHO05D003183 1.0e-06 56.6 144 30.6
FAN26G1081 Fragaria x ananassa HOM05D002901 ORTHO05D003183 1.0e-06 56.6 42 69.0
Nitab4.5_0004159g0060 Nicotiana tabacum HOM05D002901 ORTHO05D003183 1.0e-06 56.6 43 62.8
Nitab4.5_0006035g0020 Nicotiana tabacum HOM05D002901 ORTHO05D003183 1.0e-06 56.6 43 62.8
Sabra19G0097500 Salix brachista HOM05D002901 ORTHO05D003183 1.0e-06 56.6 140 29.3
Zm00001eb192920 Zea mays HOM05D002901 ORTHO05D003183 1.0e-06 56.6 149 27.5
Haze_17884 Corylus avellana HOM05D002901 ORTHO05D003183 1.3e-06 56.2 43 65.1
AUR62034384 Chenopodium quinoa HOM05D002901 ORTHO05D003183 1.7e-06 55.8 43 65.1
Dinv13070 Davidia involucrata HOM05D002901 ORTHO05D003183 1.7e-06 55.8 43 62.8
Actinidia15630 Actinidia chinensis HOM05D002901 ORTHO05D003183 2.2e-06 55.5 43 60.5
Actinidia26527 Actinidia chinensis HOM05D002901 ORTHO05D003183 2.2e-06 55.5 43 60.5
CAN.G492.42 Capsicum annuum HOM05D002901 ORTHO05D003183 2.2e-06 55.5 43 62.8
Dinv44719 Davidia involucrata HOM05D002901 ORTHO05D003183 2.2e-06 55.5 43 60.5
Sc08g0007760 Simmondsia chinensis HOM05D002901 ORTHO05D003183 2.9e-06 55.1 38 68.4
ClCG10G013530 Citrullus lanatus HOM05D002901 ORTHO05D003183 3.8e-06 54.7 147 28.6
MELO3C026620.2 Cucumis melo HOM05D002901 ORTHO05D003183 3.8e-06 54.7 144 29.2
Migut.N01700 Erythranthe guttata HOM05D002901 ORTHO05D003183 3.8e-06 54.7 42 64.3
AUR62022324 Chenopodium quinoa HOM05D002901 ORTHO05D003183 5.0e-06 54.3 43 62.8
CsaV3_3G043110 Cucumis sativus L. HOM05D002901 ORTHO05D003183 6.5e-06 53.9 147 29.9
DCAR_029545 Daucus carota HOM05D002901 ORTHO05D003183 6.5e-06 53.9 51 54.9
Hma1.2p1_0276F.1_g111320 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 6.5e-06 53.9 43 62.8
HPP92_020942 Vanilla planifolia HOM05D002901 ORTHO05D003183 6.5e-06 53.9 43 60.5
CSS0013111 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 8.5e-06 53.5 42 61.9
Lj9P646T34 Lonicera japonica HOM05D002901 ORTHO05D003183 8.5e-06 53.5 144 26.4
Nn3g16735 Nelumbo nucifera HOM05D002901 ORTHO05D003183 8.5e-06 53.5 147 27.2


User provided reference genes

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