Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 3.7e-180 634.8 333 100.0
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 6.2e-175 617.5 333 98.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 4.4e-173 611.3 332 96.4
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 7.5e-173 610.5 332 96.1
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 3.5e-170 601.7 334 96.7
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.9e-156 555.4 341 87.1
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.8e-149 531.2 341 83.9
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.8e-142 509.6 342 80.7
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 8.4e-140 500.7 339 80.5
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 8.4e-140 500.7 340 80.0
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.1e-138 496.1 345 79.1
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 5.1e-137 491.5 341 80.6
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.1e-137 491.5 344 77.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-134 483.8 339 78.5
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.1e-134 483.8 339 78.5
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-133 480.3 341 80.4
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.4e-131 473.4 341 78.6
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 8.2e-119 431.0 340 70.3
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.4e-118 429.5 333 72.1
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 9.0e-118 427.6 333 72.1
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.5e-115 419.5 338 71.0
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 2.7e-114 416.0 334 70.7
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 3.6e-114 415.6 334 70.7
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 6.1e-114 414.8 334 69.5
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.4e-112 407.9 334 68.6
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.3e-110 401.7 343 67.1
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 7.7e-109 397.9 334 68.3
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 7.7e-109 397.9 334 68.3
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 5.0e-108 395.2 334 68.3
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 4.2e-107 392.1 334 68.6
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 7.2e-107 391.3 346 65.6
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.1e-102 375.6 336 65.5
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 6.5e-100 368.2 338 61.8
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.1e-99 367.5 345 60.6
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 3.6e-98 362.5 351 60.1
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-97 360.5 346 59.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 6.7e-97 358.2 347 59.4
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.7e-97 358.2 338 60.1
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.5e-96 357.1 347 58.8
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.5e-96 357.1 348 58.3
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 4.4e-96 355.5 342 60.2
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 7.4e-96 354.8 348 58.0
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 9.7e-96 354.4 347 58.8
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.3e-95 354.0 347 59.4
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.3e-95 354.0 359 57.1
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.3e-95 354.0 347 58.5
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-95 354.0 346 59.0
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.7e-95 353.6 326 61.0
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.2e-95 353.2 346 59.0
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.7e-95 352.4 347 59.9
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 3.7e-95 352.4 353 56.7
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 6.3e-95 351.7 346 58.4
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.1e-94 350.9 347 58.5
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 4.1e-94 349.0 347 57.1
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.7e-92 343.6 347 57.6
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.5e-92 341.3 346 57.8
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.1e-91 340.9 353 57.5
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 2.5e-91 339.7 347 56.8
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.2e-91 339.0 351 56.7
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.2e-91 338.2 346 58.4
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 9.4e-91 337.8 327 58.1
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.1e-90 336.7 346 58.1
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.1e-90 335.1 346 58.1
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 8.0e-90 334.7 339 57.8
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.8e-89 333.6 325 59.1
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.0e-89 332.4 346 57.8
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 8.8e-89 331.3 347 57.1
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.6e-88 329.7 346 57.5
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.6e-88 329.7 343 57.1
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 3.4e-88 329.3 347 56.5
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 3.4e-88 329.3 348 55.7
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 2.2e-87 326.6 346 55.2
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 4.8e-87 325.5 347 54.8
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.4e-86 323.2 407 51.4
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 5.3e-86 322.0 336 58.9
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 9.1e-86 321.2 342 55.8
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.2e-85 320.9 349 56.7
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.6e-85 320.5 350 54.3
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.7e-85 319.7 391 50.9
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.5e-85 319.3 350 54.6
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 4.5e-85 318.9 347 55.9
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.5e-85 318.9 344 54.9
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.0e-84 317.8 354 54.2
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.3e-84 317.4 349 57.3
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.7e-84 317.0 347 54.5
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 2.2e-84 316.6 330 57.3
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.9e-84 316.2 326 57.1
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 2.9e-84 316.2 326 57.1
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.5e-83 313.9 348 54.0
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 4.2e-83 312.4 346 56.1
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 9.4e-83 311.2 351 54.1
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.6e-82 310.5 354 55.1
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 2.7e-82 309.7 416 49.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 3.6e-82 309.3 334 56.9
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 4.7e-82 308.9 326 56.7
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 8.0e-82 308.1 342 54.4
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.3e-81 306.6 350 54.6
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 3.0e-81 306.2 347 52.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 8.8e-81 304.7 325 55.1
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.2e-80 304.3 337 56.1
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.0e-80 303.5 326 57.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.0e-80 303.5 319 58.3
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 3.4e-80 302.8 338 54.1
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 5.7e-80 302.0 326 55.8
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.3e-79 300.8 323 56.3
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 6.3e-79 298.5 358 54.2
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 6.3e-79 298.5 391 50.6
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.1e-78 297.7 337 54.6
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 2.4e-78 296.6 339 58.4
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.4e-78 296.6 336 51.8
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 9.1e-78 294.7 351 53.0
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.6e-77 293.9 328 55.8
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 2.0e-77 293.5 325 55.1
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 3.5e-77 292.7 324 55.2
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.0e-76 291.2 297 56.2
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.3e-76 290.8 351 52.4
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.7e-76 290.4 347 51.3
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.3e-76 290.0 357 52.4
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 5.0e-76 288.9 345 51.3
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.5e-75 287.3 348 52.0
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.5e-75 286.6 348 50.6
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.5e-75 286.6 348 50.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 2.8e-74 283.1 337 51.9
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 3.0e-73 279.6 324 51.9
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 8.9e-73 278.1 195 77.9
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 2.0e-72 276.9 283 55.5
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.8e-71 273.1 260 63.1
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 3.7e-71 272.7 337 52.2
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 6.3e-71 271.9 346 49.4
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 6.3e-71 271.9 343 49.0
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.3e-71 271.9 348 48.9
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.1e-67 261.2 348 48.3
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 3.3e-67 259.6 343 47.8
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.3e-67 259.2 327 50.8
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 5.6e-67 258.8 244 61.9
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 7.3e-67 258.5 346 48.8
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.2e-66 257.7 243 59.7
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.8e-65 253.8 336 47.9
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 6.8e-65 251.9 337 47.2
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.7e-63 247.3 345 47.5
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.1e-62 244.6 349 47.0
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 4.6e-61 239.2 352 45.7
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 8.6e-60 235.0 255 54.9
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 6.2e-58 228.8 326 47.5
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 5.8e-48 195.7 237 48.5
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.4e-41 174.5 342 40.6
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.6e-29 132.9 249 39.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 3.0e-28 130.2 386 30.1
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 4.3e-27 126.3 338 32.2
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.5e-24 117.9 141 51.1
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.4e-17 94.0 158 43.7
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 4.9e-15 86.3 89 51.7
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.5e-13 80.1 155 38.7
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 4.1e-09 66.6 59 59.3
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 6.9e-09 65.9 200 30.5
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.1e-06 58.5 206 28.2
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 1.4e-06 58.2 153 34.6
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.5e-06 57.4 344 24.1


User provided reference genes

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