Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 1.9e-167 592.4 306 100.0
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 1.3e-166 589.7 306 99.7
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 1.7e-166 589.3 306 99.0
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 3.7e-166 588.2 306 99.3
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 8.2e-166 587.0 306 99.0
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 1.9e-162 575.9 335 91.0
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 2.5e-162 575.5 306 96.4
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.2e-161 573.2 306 95.4
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 2.1e-161 572.4 306 96.4
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 2.3e-160 568.9 307 95.4
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 2.3e-160 568.9 306 95.1
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 3.3e-159 565.1 306 93.8
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 3.0e-152 542.0 306 93.5
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 5.3e-149 531.2 306 88.2
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 1.9e-146 522.7 320 88.1
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 5.0e-139 498.0 306 83.7
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 2.5e-122 442.6 306 74.5
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 4.3e-122 441.8 312 74.0
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 7.3e-122 441.0 306 73.2
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 7.3e-122 441.0 312 73.1
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 2.8e-121 439.1 306 72.9
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.8e-121 439.1 306 70.9
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 4.7e-121 438.3 306 72.2
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 1.8e-120 436.4 312 72.4
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 2.3e-120 436.0 306 73.2
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 2.3e-120 436.0 313 72.2
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 2.3e-120 436.0 306 72.5
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 5.2e-120 434.9 306 72.9
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 5.2e-120 434.9 308 72.1
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 8.9e-120 434.1 306 72.5
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.2e-119 433.7 312 72.1
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 3.4e-119 432.2 306 72.2
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 9.8e-119 430.6 306 71.2
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 1.7e-118 429.9 318 71.4
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 1.7e-118 429.9 306 70.9
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 6.4e-118 427.9 306 70.6
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 8.3e-118 427.6 306 71.6
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 1.1e-117 427.2 306 71.9
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.9e-117 426.4 306 71.2
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.9e-117 426.4 306 70.9
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 3.2e-117 425.6 306 70.9
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 3.2e-117 425.6 306 70.9
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 3.2e-117 425.6 306 70.6
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 7.0e-117 424.5 334 68.0
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 7.0e-117 424.5 334 68.0
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 7.0e-117 424.5 306 69.3
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 7.0e-117 424.5 306 70.6
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.2e-116 423.7 306 70.9
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 1.6e-116 423.3 307 72.3
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 2.0e-116 422.9 306 70.6
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 2.0e-116 422.9 306 69.3
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 3.5e-116 422.2 309 69.6
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 3.5e-116 422.2 306 70.9
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 4.6e-116 421.8 306 69.9
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 4.6e-116 421.8 306 70.6
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 6.0e-116 421.4 306 70.3
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 6.0e-116 421.4 308 70.5
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 6.0e-116 421.4 306 70.3
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 1.1e-114 417.2 306 70.3
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 1.9e-114 416.4 306 70.3
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 9.5e-114 414.1 276 74.3
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 9.5e-114 414.1 307 68.1
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 9.5e-114 414.1 309 68.6
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 1.2e-113 413.7 305 69.8
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 1.6e-113 413.3 314 69.4
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 2.1e-113 412.9 270 74.8
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 2.1e-113 412.9 306 68.3
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 4.7e-113 411.8 308 69.2
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 8.0e-113 411.0 308 69.2
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 8.0e-113 411.0 308 69.2
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 8.0e-113 411.0 308 69.2
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 4.0e-112 408.7 305 67.2
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 5.2e-112 408.3 310 68.1
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 1.2e-111 407.1 304 67.1
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 3.4e-111 405.6 310 68.1
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 3.4e-111 405.6 310 67.7
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 7.5e-111 404.4 272 73.9
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 7.5e-111 404.4 352 61.9
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 3.7e-110 402.1 310 67.1
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 3.7e-110 402.1 312 67.9
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 1.4e-109 400.2 306 65.0
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.9e-109 399.8 271 72.3
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 2.4e-109 399.4 306 66.0
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 3.2e-109 399.1 311 66.6
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 5.1e-107 391.7 311 66.6
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 1.5e-106 390.2 272 71.7
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 2.3e-104 382.9 315 63.8
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.2e-103 380.6 296 65.5
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 1.5e-103 380.2 325 64.6
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 1.2e-100 370.5 278 69.1
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 1.3e-99 367.1 306 62.4
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 3.0e-99 365.9 306 62.4
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.9e-94 349.4 324 58.3
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.3e-91 339.7 346 54.6
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 7.3e-90 334.7 320 56.2
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 4.9e-86 322.0 272 62.1
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 7.1e-85 318.2 237 70.5
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.7e-83 313.5 231 68.0
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 6.6e-83 311.6 272 59.2
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 2.8e-81 306.2 314 53.8
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 4.8e-81 305.4 236 69.1
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 1.1e-77 294.3 202 73.3
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 1.9e-69 266.9 260 56.5
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 1.5e-66 257.3 306 47.7
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 6.2e-65 251.9 209 64.6
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 5.8e-63 245.4 261 48.7
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 3.9e-59 232.6 287 43.6
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 1.5e-55 220.7 192 64.1
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 3.9e-51 206.1 316 39.6
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 2.9e-46 189.9 155 66.5
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 3.3e-42 176.4 295 36.9
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 1.5e-37 161.0 244 38.9
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 3.0e-35 153.3 247 37.2
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 5.2e-35 152.5 182 50.0
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 7.0e-32 142.1 116 60.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 9.4e-29 131.7 206 38.8
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.7e-25 120.9 88 68.2
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 1.9e-21 107.5 93 60.2
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 1.2e-18 98.2 74 64.9
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 4.1e-16 89.7 78 61.5
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 2.7e-15 87.0 166 36.1
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 2.9e-09 67.0 79 53.2
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 8.6e-06 55.5 57 40.4


User provided reference genes

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