Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50504 Brassica carinata HOM05D006426 ORTHO05D007737 1.1e-194 683.3 393 100.0
BolC1t02416H Brassica oleracea HOM05D006426 ORTHO05D007737 5.5e-191 671.0 393 96.9
C01p24670 Brassica napus HOM05D006426 ORTHO05D007737 1.2e-190 669.8 393 96.7
BraA01t01897Z Brassica rapa HOM05D006426 ORTHO05D007737 7.0e-186 654.1 394 92.6
A01p19640 Brassica napus HOM05D006426 ORTHO05D007737 5.9e-185 651.0 396 90.2
BcaNung01587 Brassica carinata HOM05D006426 ORTHO05D007737 3.0e-168 595.5 396 84.1
Sp7g26190 Schrenkiella parvula HOM05D006426 ORTHO05D007737 3.3e-151 538.9 424 77.8
Thhalv10025277m.g Eutrema salsugineum HOM05D006426 ORTHO05D007737 2.9e-139 499.2 433 70.0
AL7G24370 Arabidopsis lyrata HOM05D006426 ORTHO05D007737 1.5e-132 476.9 412 71.4
CARHR235940 Cardamine hirsuta HOM05D006426 ORTHO05D007737 2.4e-130 469.5 428 68.5
Carub.0007s1253 Capsella rubella HOM05D006426 ORTHO05D007737 1.2e-129 467.2 414 69.6
AT4G28230 Arabidopsis thaliana HOM05D006426 ORTHO05D007737 2.3e-128 463.0 410 69.8
Aa31LG2G22090 Aethionema arabicum HOM05D006426 ORTHO05D007737 2.5e-111 406.4 432 62.3
THA.LOC104804065 Tarenaya hassleriana HOM05D006426 ORTHO05D007737 1.3e-99 367.5 425 56.9
COL.COLO4_13683 Corchorus olitorius HOM05D006426 ORTHO05D007737 4.5e-76 289.3 447 45.6
Thecc.02G171600 Theobroma cacao HOM05D006426 ORTHO05D007737 5.9e-76 288.9 463 45.4
Gohir.A03G160000 Gossypium hirsutum HOM05D006426 ORTHO05D007737 1.5e-74 284.3 461 45.8
Gorai.005G205500 Gossypium raimondii HOM05D006426 ORTHO05D007737 7.2e-74 282.0 456 44.1
Gohir.D02G183100 Gossypium hirsutum HOM05D006426 ORTHO05D007737 9.5e-74 281.6 456 44.1
Duzib132G0414 Durio zibethinus HOM05D006426 ORTHO05D007737 5.9e-68 262.3 456 43.4
Cfa014544 Carpinus fangiana HOM05D006426 ORTHO05D007737 7.8e-68 261.9 455 43.1
Haze_13087 Corylus avellana HOM05D006426 ORTHO05D007737 2.9e-67 260.0 458 43.2
Duzib248G1395 Durio zibethinus HOM05D006426 ORTHO05D007737 1.5e-66 257.7 468 42.9
TWI75G1119 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 4.0e-64 249.6 464 41.8
TWI36G1326 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 2.0e-63 247.3 463 41.9
Cpa.g.sc34.90 Carica papaya HOM05D006426 ORTHO05D007737 2.6e-63 246.9 446 44.2
Ciclev10015289m.g Citrus clementina HOM05D006426 ORTHO05D007737 2.9e-62 243.4 417 43.4
QL08p037311 Quercus lobata HOM05D006426 ORTHO05D007737 3.7e-62 243.0 465 41.5
CiPaw.04G122700 Carya illinoinensis HOM05D006426 ORTHO05D007737 2.4e-61 240.4 452 41.6
TWI18G0136 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 1.7e-59 234.2 457 40.0
Potri.013G147500 Populus trichocarpa HOM05D006426 ORTHO05D007737 5.6e-58 229.2 442 41.2
Prupe.3G231100 Prunus persica HOM05D006426 ORTHO05D007737 2.1e-57 227.3 461 39.9
Sabra13G0119100 Salix brachista HOM05D006426 ORTHO05D007737 2.8e-57 226.9 439 41.7
Sopen07g028590 Solanum pennellii HOM05D006426 ORTHO05D007737 2.8e-57 226.9 475 38.7
Manes.13G151600 Manihot esculenta HOM05D006426 ORTHO05D007737 3.6e-57 226.5 449 41.6
PGR042G3565 Punica granatum HOM05D006426 ORTHO05D007737 3.6e-57 226.5 450 41.8
PGSC0003DMG400018371 Solanum tuberosum HOM05D006426 ORTHO05D007737 3.6e-57 226.5 478 38.7
Solyc07g054690.1 Solanum lycopersicum HOM05D006426 ORTHO05D007737 4.7e-57 226.1 476 39.1
Potri.019G116200 Populus trichocarpa HOM05D006426 ORTHO05D007737 1.1e-56 224.9 441 42.4
Actinidia09902 Actinidia chinensis HOM05D006426 ORTHO05D007737 1.4e-56 224.6 452 40.3
CAN.G508.22 Capsicum annuum HOM05D006426 ORTHO05D007737 1.8e-56 224.2 459 39.2
Actinidia12458 Actinidia chinensis HOM05D006426 ORTHO05D007737 2.3e-56 223.8 472 40.3
MD09G1096400 Malus domestica HOM05D006426 ORTHO05D007737 1.5e-55 221.1 459 38.8
RcHm_v2.0_Chr2g0161781 Rosa chinensis HOM05D006426 ORTHO05D007737 2.0e-55 220.7 442 41.0
FAN02G4384 Fragaria x ananassa HOM05D006426 ORTHO05D007737 2.6e-55 220.3 439 41.0
MD17G1084500 Malus domestica HOM05D006426 ORTHO05D007737 9.8e-55 218.4 454 39.2
FAN09G0359 Fragaria x ananassa HOM05D006426 ORTHO05D007737 1.3e-54 218.0 439 40.8
Nitab4.5_0002370g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 1.3e-54 218.0 479 40.9
Manes.12G083000 Manihot esculenta HOM05D006426 ORTHO05D007737 1.7e-54 217.6 446 40.4
FAN14G1414 Fragaria x ananassa HOM05D006426 ORTHO05D007737 2.9e-54 216.9 436 40.4
FvH4_6g44570 Fragaria vesca HOM05D006426 ORTHO05D007737 3.7e-54 216.5 436 40.4
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.1e-53 214.9 446 40.8
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 2.4e-53 213.8 469 38.8
Nitab4.5_0001871g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 2.4e-53 213.8 478 36.8
Sabra19G0117200 Salix brachista HOM05D006426 ORTHO05D007737 3.2e-53 213.4 426 43.0
Peaxi162Scf00007g00272 Petunia axillaris HOM05D006426 ORTHO05D007737 4.1e-53 213.0 469 37.1
Hma1.2p1_0565F.1_g179550 Hydrangea macrophylla HOM05D006426 ORTHO05D007737 7.0e-53 212.2 448 40.2
Sabra19G0136500 Salix brachista HOM05D006426 ORTHO05D007737 7.0e-53 212.2 423 42.6
Dinv15495 Davidia involucrata HOM05D006426 ORTHO05D007737 2.0e-52 210.7 475 38.3
Cc05_g06260 Coffea canephora HOM05D006426 ORTHO05D007737 5.0e-51 206.1 492 36.4
EL10Ac9g20938 Beta vulgaris HOM05D006426 ORTHO05D007737 2.5e-50 203.8 457 39.6
Rhsim06G0152100 Rhododendron simsii HOM05D006426 ORTHO05D007737 3.6e-49 199.9 485 38.6
TAR627G1051 Trochodendron aralioides HOM05D006426 ORTHO05D007737 4.0e-48 196.4 458 37.1
ClCG02G017320 Citrullus lanatus HOM05D006426 ORTHO05D007737 5.2e-48 196.1 460 36.1
Oeu018075.1 Olea europaea HOM05D006426 ORTHO05D007737 8.9e-48 195.3 471 38.0
Sed0007067 Sechium edule HOM05D006426 ORTHO05D007737 1.2e-47 194.9 446 38.3
MSTRG.14180 Avicennia marina HOM05D006426 ORTHO05D007737 2.6e-47 193.7 453 39.7
MELO3C013535.2 Cucumis melo HOM05D006426 ORTHO05D007737 3.4e-47 193.4 461 35.4
Nn1g03877 Nelumbo nucifera HOM05D006426 ORTHO05D007737 6.4e-46 189.1 474 36.9
arahy.Tifrunner.gnm1.ann1.512YGT Arachis hypogaea HOM05D006426 ORTHO05D007737 9.2e-45 185.3 436 36.7
CsaV3_6G012420 Cucumis sativus L. HOM05D006426 ORTHO05D007737 2.1e-44 184.1 462 36.4
arahy.Tifrunner.gnm1.ann1.2866YZ Arachis hypogaea HOM05D006426 ORTHO05D007737 6.0e-44 182.6 432 37.0
Oeu025481.1 Olea europaea HOM05D006426 ORTHO05D007737 2.3e-43 180.6 503 35.0
TAR626G1919 Trochodendron aralioides HOM05D006426 ORTHO05D007737 3.9e-43 179.9 417 36.7
Migut.H01020 Erythranthe guttata HOM05D006426 ORTHO05D007737 7.3e-42 175.6 465 38.5
DCAR_009725 Daucus carota HOM05D006426 ORTHO05D007737 1.1e-40 171.8 445 36.6
Eucgr.A01776 Eucalyptus grandis HOM05D006426 ORTHO05D007737 5.2e-40 169.5 398 39.9
TAR629G2656 Trochodendron aralioides HOM05D006426 ORTHO05D007737 5.2e-40 169.5 425 35.5
Sc06g0009150 Simmondsia chinensis HOM05D006426 ORTHO05D007737 2.6e-39 167.2 448 34.6
SGA_v2.0_scaffold49G18304 Striga asiatica HOM05D006426 ORTHO05D007737 4.4e-39 166.4 459 36.6
Lj8P117T60 Lonicera japonica HOM05D006426 ORTHO05D007737 1.3e-38 164.9 324 41.4
Atru.chr6.3076 Acer truncatum HOM05D006426 ORTHO05D007737 1.7e-38 164.5 306 39.9
VMungo1080G0900 Vigna mungo HOM05D006426 ORTHO05D007737 1.0e-35 155.2 405 35.3
Phvul.005G017100 Phaseolus vulgaris HOM05D006426 ORTHO05D007737 6.6e-35 152.5 405 34.8
Glyma.04G132700 Glycine max HOM05D006426 ORTHO05D007737 1.2e-33 148.3 402 35.1
Glyma.11G158800 Glycine max HOM05D006426 ORTHO05D007737 1.2e-33 148.3 411 34.1
MBI18_g45419_MAGBIO Magnolia biondii HOM05D006426 ORTHO05D007737 4.7e-33 146.4 473 33.6
SalBow1G4632 Salvia bowleyana HOM05D006426 ORTHO05D007737 8.1e-33 145.6 435 35.9
DCAR_012977 Daucus carota HOM05D006426 ORTHO05D007737 1.8e-32 144.4 397 33.2
Lj3g0000273 Lotus japonicus HOM05D006426 ORTHO05D007737 2.0e-31 141.0 430 35.6
PSO832G1174 Papaver somniferum HOM05D006426 ORTHO05D007737 3.4e-31 140.2 426 33.6
Lsat_1_v5_gn_4_69460 Lactuca sativa HOM05D006426 ORTHO05D007737 1.3e-30 138.3 455 34.3
unitig_52.g17339 Utricularia gibba HOM05D006426 ORTHO05D007737 1.3e-30 138.3 435 35.2
PSO210G4394 Papaver somniferum HOM05D006426 ORTHO05D007737 1.4e-29 134.8 447 32.2
Psat5g223040 Pisum sativum HOM05D006426 ORTHO05D007737 3.5e-28 130.2 430 34.4
HanXRQChr15g0488091 Helianthus annuus HOM05D006426 ORTHO05D007737 4.6e-28 129.8 409 33.5
ECA232G2383 Erigeron canadensis HOM05D006426 ORTHO05D007737 1.3e-27 128.3 433 33.5
PSO675G8522 Papaver somniferum HOM05D006426 ORTHO05D007737 5.1e-27 126.3 483 32.9
Lalb_Chr01g0017281 Lupinus albus HOM05D006426 ORTHO05D007737 1.1e-26 125.2 453 32.7
PSO541G1576 Papaver somniferum HOM05D006426 ORTHO05D007737 2.5e-26 124.0 482 33.0
Aqoxy1G03895 Aquilegia oxysepala HOM05D006426 ORTHO05D007737 4.3e-26 123.2 492 30.9
Sed0009175 Sechium edule HOM05D006426 ORTHO05D007737 1.5e-23 114.8 350 33.1
SGA_v2.0_scaffold159G37625 Striga asiatica HOM05D006426 ORTHO05D007737 2.0e-23 114.4 370 33.2
Medtr3g013540 Medicago truncatula HOM05D006426 ORTHO05D007737 7.6e-23 112.5 412 32.5
TPR.G1458 Trifolium pratense HOM05D006426 ORTHO05D007737 2.1e-20 104.4 435 31.5
Ca_18074_v3 Cicer arietinum L. HOM05D006426 ORTHO05D007737 3.9e-19 100.1 404 33.2
ATR0693G210 Amborella trichopoda HOM05D006426 ORTHO05D007737 1.2e-15 88.6 494 29.8
GSVIVG01030006001 Vitis vinifera HOM05D006426 ORTHO05D007737 2.6e-15 87.4 146 43.2
HPP92_011122 Vanilla planifolia HOM05D006426 ORTHO05D007737 4.2e-13 80.1 388 30.9
CDE10G0475 Ceratophyllum demersum HOM05D006426 ORTHO05D007737 6.7e-11 72.8 454 27.5
FvH4_6g44594 Fragaria vesca HOM05D006426 ORTHO05D007737 6.7e-11 72.8 156 40.4
Lj1P736T39 Lonicera japonica HOM05D006426 ORTHO05D007737 1.3e-09 68.6 155 41.3
HPP92_011117 Vanilla planifolia HOM05D006426 ORTHO05D007737 1.8e-08 64.7 431 28.3
Oeu029930.1 Olea europaea HOM05D006426 ORTHO05D007737 9.0e-08 62.4 145 36.6
Oeu035359.1 Olea europaea HOM05D006426 ORTHO05D007737 4.5e-07 60.1 145 35.2
unitig_62.g23190 Utricularia gibba HOM05D006426 ORTHO05D007737 1.0e-06 58.9 148 39.9
Oeu003230.1 Olea europaea HOM05D006426 ORTHO05D007737 8.4e-06 55.8 145 35.9


User provided reference genes

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