Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 8.6e-44 179.9 87 100.0
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 8.6e-44 179.9 87 100.0
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 8.6e-44 179.9 87 100.0
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 8.6e-44 179.9 87 100.0
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 8.6e-44 179.9 87 100.0
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 1.2e-34 149.4 88 84.1
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 6.8e-33 143.7 87 81.6
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 5.8e-32 140.6 87 79.3
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 1.3e-31 139.4 87 77.0
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.3e-31 139.4 88 79.5
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.3e-31 139.4 88 79.5
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 2.2e-31 138.7 87 77.0
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 2.2e-31 138.7 87 77.0
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 1.1e-30 136.3 87 74.7
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 1.4e-30 136.0 87 74.7
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 9.2e-30 133.3 87 75.9
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 9.2e-30 133.3 87 75.9
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 9.2e-30 133.3 90 76.7
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 5.1e-28 127.5 87 73.6
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.1e-27 126.3 92 71.7
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 4.3e-27 124.4 88 71.6
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 1.9e-19 99.0 87 58.6
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 2.4e-14 82.0 97 48.5
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 7.1e-14 80.5 89 48.3
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 4.6e-13 77.8 97 47.4
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 7.8e-13 77.0 92 44.6
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 7.8e-13 77.0 98 46.9
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 7.8e-13 77.0 100 43.0
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.3e-12 76.3 100 43.0
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 3.0e-12 75.1 99 43.4
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.6e-12 73.9 96 42.7
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 8.7e-12 73.6 92 45.7
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 1.5e-11 72.8 87 42.5
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.9e-11 72.4 96 47.9
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 5.6e-11 70.9 92 42.4
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 7.3e-11 70.5 108 39.8
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 9.6e-11 70.1 93 44.1
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 9.6e-11 70.1 99 39.4
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 1.3e-10 69.7 93 43.0
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 1.3e-10 69.7 93 44.1
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.3e-10 69.7 95 42.1
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 1.6e-10 69.3 95 43.2
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.6e-10 69.3 92 43.5
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 2.1e-10 68.9 97 38.1
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 2.8e-10 68.6 88 42.0
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 3.6e-10 68.2 88 42.0
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 4.8e-10 67.8 94 39.4
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 4.8e-10 67.8 97 45.4
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 6.2e-10 67.4 97 37.1
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 6.2e-10 67.4 97 37.1
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 8.1e-10 67.0 103 38.8
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.1e-10 67.0 98 41.8
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 8.1e-10 67.0 96 47.9
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.1e-09 66.6 103 38.8
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.1e-09 66.6 93 41.9
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 1.1e-09 66.6 92 44.6
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.8e-09 65.9 98 43.9
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 1.8e-09 65.9 98 40.8
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.8e-09 65.9 97 44.3
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 2.4e-09 65.5 96 42.7
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 2.4e-09 65.5 95 38.9
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 3.1e-09 65.1 95 42.1
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 3.1e-09 65.1 93 41.9
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 4.0e-09 64.7 92 41.3
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.3e-09 64.3 100 39.0
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 5.3e-09 64.3 88 44.3
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 6.9e-09 63.9 90 43.3
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 6.9e-09 63.9 86 45.3
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 6.9e-09 63.9 94 41.5
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.2e-08 63.2 88 38.6
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.2e-08 63.2 92 35.9
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 1.5e-08 62.8 92 42.4
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.0e-08 62.4 83 39.8
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.4e-08 61.6 92 41.3
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.4e-08 61.2 92 39.1
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 5.8e-08 60.8 93 40.9
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 5.8e-08 60.8 93 38.7
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 9.9e-08 60.1 93 40.9
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 9.9e-08 60.1 83 38.6
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.3e-07 59.7 95 43.2
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 1.3e-07 59.7 90 42.2
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 2.2e-07 58.9 95 43.2
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.9e-07 58.5 89 39.3
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.8e-07 58.2 92 40.2
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 3.8e-07 58.2 93 39.8
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 8.4e-07 57.0 85 40.0
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 1.1e-06 56.6 91 37.4
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.9e-06 55.8 89 38.2
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 1.9e-06 55.8 90 34.4
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 2.4e-06 55.5 93 40.9
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 2.4e-06 55.5 93 40.9
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.2e-06 55.1 89 37.1
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 4.2e-06 54.7 94 39.4
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 5.4e-06 54.3 96 40.6
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 7.1e-06 53.9 93 37.6
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 9.3e-06 53.5 91 33.0


User provided reference genes

Program Settings