Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 7.4e-78 293.9 159 100.0
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 7.4e-78 293.9 159 100.0
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 1.7e-77 292.7 159 99.4
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 1.7e-77 292.7 159 99.4
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 7.0e-76 287.3 159 97.5
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 2.5e-73 278.9 159 95.0
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 7.2e-73 277.3 159 95.0
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.6e-70 268.9 159 91.8
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 3.4e-70 268.5 159 91.2
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 5.7e-70 267.7 159 91.2
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.7e-69 266.2 159 90.6
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.1e-64 249.2 158 84.8
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 4.0e-63 245.0 150 90.0
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 4.0e-63 245.0 150 90.0
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 4.4e-62 241.5 148 89.2
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 5.9e-59 231.1 158 81.0
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 1.4e-52 209.9 148 77.7
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 1.4e-52 209.9 148 77.7
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 2.1e-48 196.1 149 75.8
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 1.4e-44 183.3 155 65.2
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 3.2e-44 182.2 144 66.7
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 4.1e-44 181.8 150 64.0
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 5.4e-44 181.4 142 66.9
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 9.2e-44 180.6 151 64.9
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 1.2e-43 180.3 146 65.8
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 2.0e-43 179.5 140 67.1
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 2.7e-43 179.1 148 62.8
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 6.0e-43 177.9 149 63.1
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.3e-42 176.8 164 60.4
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 3.0e-42 175.6 159 60.4
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 3.0e-42 175.6 163 59.5
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 3.0e-42 175.6 176 56.2
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 5.0e-42 174.9 153 60.1
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 6.6e-42 174.5 149 61.1
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 8.6e-42 174.1 156 60.3
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.1e-41 173.7 158 60.8
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.1e-41 173.7 156 60.3
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.5e-41 173.3 144 64.6
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.5e-41 173.3 141 64.5
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.5e-41 173.3 163 57.1
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 2.5e-41 172.6 147 71.4
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.5e-41 172.6 147 61.2
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.3e-41 172.2 144 63.2
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 3.3e-41 172.2 144 63.2
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 4.3e-41 171.8 160 59.4
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 5.6e-41 171.4 163 57.7
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 7.3e-41 171.0 163 57.7
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 7.3e-41 171.0 163 57.7
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 7.3e-41 171.0 144 62.5
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 9.5e-41 170.6 154 61.7
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 9.5e-41 170.6 156 59.6
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 1.2e-40 170.2 142 64.1
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 1.2e-40 170.2 142 64.1
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 1.2e-40 170.2 142 64.1
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 1.2e-40 170.2 161 59.0
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.2e-40 170.2 141 63.8
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 1.2e-40 170.2 165 57.6
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 1.6e-40 169.9 142 64.1
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 1.6e-40 169.9 142 64.1
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-40 169.9 156 59.6
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-40 169.9 156 59.6
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-40 169.9 156 59.6
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 1.6e-40 169.9 145 62.1
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.6e-40 169.9 159 59.1
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 2.8e-40 169.1 141 63.1
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.8e-40 169.1 141 63.1
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 2.8e-40 169.1 157 59.2
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 2.8e-40 169.1 145 61.4
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 3.6e-40 168.7 143 62.9
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 3.6e-40 168.7 143 62.9
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 3.6e-40 168.7 141 61.0
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 6.2e-40 167.9 144 61.8
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 6.2e-40 167.9 144 61.8
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 6.2e-40 167.9 144 61.8
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 6.2e-40 167.9 146 61.0
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 8.1e-40 167.5 159 58.5
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 8.1e-40 167.5 158 58.9
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.4e-39 166.8 151 58.3
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 1.8e-39 166.4 139 63.3
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 2.3e-39 166.0 142 62.0
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.1e-39 165.6 144 61.1
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 4.0e-39 165.2 142 59.9
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 5.2e-39 164.9 158 56.3
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 5.2e-39 164.9 144 61.8
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 6.8e-39 164.5 131 66.4
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 8.9e-39 164.1 140 62.9
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 1.2e-38 163.7 140 60.7
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 2.0e-38 162.9 160 56.2
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 2.0e-38 162.9 145 59.3
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.4e-38 162.2 136 62.5
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 4.4e-38 161.8 155 57.4
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 4.4e-38 161.8 154 59.1
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 5.8e-38 161.4 136 64.7
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.8e-38 160.6 151 53.0
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 9.8e-38 160.6 158 56.3
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 9.8e-38 160.6 146 56.8
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 1.3e-37 160.2 151 57.6
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.7e-37 159.8 152 54.6
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 2.2e-37 159.5 138 58.7
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 2.9e-37 159.1 135 60.7
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 4.9e-37 158.3 148 57.4
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 4.9e-37 158.3 148 57.4
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 4.9e-37 158.3 133 60.9
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 4.9e-37 158.3 151 57.0
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 6.4e-37 157.9 139 61.9
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 8.3e-37 157.5 133 62.4
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 1.1e-36 157.1 158 54.4
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.9e-36 156.4 159 54.1
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 3.2e-36 155.6 143 57.3
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.2e-36 155.6 130 61.5
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 4.1e-36 155.2 165 52.7
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 7.1e-36 154.5 152 54.6
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 1.2e-35 153.7 149 55.7
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.1e-35 152.9 151 54.3
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 6.0e-35 151.4 161 52.2
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 7.8e-35 151.0 138 55.8
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 7.8e-35 151.0 139 58.3
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 1.7e-34 149.8 143 56.6
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 2.3e-34 149.4 143 56.6
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 3.9e-34 148.7 135 59.3
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.1e-33 147.1 133 57.1
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.5e-33 146.0 147 54.4
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 5.6e-33 144.8 156 51.3
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 9.5e-33 144.1 140 55.7
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 2.1e-32 142.9 140 56.4
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 6.2e-32 141.4 129 57.4
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 8.1e-32 141.0 141 53.9
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.1e-31 140.6 130 56.9
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 2.3e-31 139.4 141 53.2
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 3.1e-31 139.0 132 55.3
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 4.0e-31 138.7 122 62.3
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 9.9e-30 134.0 143 52.4
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.3e-29 133.7 126 57.1
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 8.4e-29 131.0 152 50.7
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 1.1e-28 130.6 140 51.4
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 4.1e-28 128.6 136 53.7
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 9.2e-28 127.5 123 57.7
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 9.2e-28 127.5 137 56.2
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 1.6e-27 126.7 142 52.1
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.3e-26 123.6 137 51.8
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 6.6e-26 121.3 119 54.6
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 4.3e-25 118.6 91 67.0
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.1e-24 116.3 133 51.9
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.8e-24 115.9 114 57.0
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 3.6e-24 115.5 136 52.2
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 8.1e-24 114.4 90 65.6
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.1e-23 114.0 136 51.5
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.8e-23 113.2 113 55.8
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.8e-23 113.2 90 65.6
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 6.8e-23 111.3 89 64.0
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 4.4e-22 108.6 150 46.0
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 2.2e-21 106.3 115 51.3
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.2e-20 102.4 139 43.9
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.5e-19 99.0 88 61.4
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 4.6e-19 98.6 122 48.4
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 7.8e-19 97.8 128 49.2
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 3.9e-18 95.5 92 56.5
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 6.6e-18 94.7 119 45.4
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 7.3e-17 91.3 115 42.6
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 9.0e-15 84.3 85 54.1
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 9.3e-12 74.3 124 44.4
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 6.0e-11 71.6 75 53.3
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.7e-10 70.1 69 53.6
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 8.7e-10 67.8 120 34.2
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.6e-08 63.5 101 39.6
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 2.8e-08 62.8 76 46.1
Zm00001eb090900 Zea mays HOM05D003772 ORTHO05D004509 8.1e-08 61.2 69 52.2
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 1.4e-07 60.5 128 31.2
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.4e-07 60.5 56 53.6
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 1.4e-07 60.5 88 40.9
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 1.8e-07 60.1 87 41.4
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 3.1e-07 59.3 112 40.2
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 6.9e-07 58.2 51 54.9
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 1.2e-06 57.4 86 43.0
ClCG02G017670 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.5e-06 57.0 78 50.0
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 1.5e-06 57.0 71 46.5
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.5e-06 57.0 132 34.8
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 2.6e-06 56.2 125 32.0
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 5.8e-06 55.1 101 38.6
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 7.6e-06 54.7 92 39.1
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 7.6e-06 54.7 138 31.2
MELO3C013623.2 Cucumis melo HOM05D003772 ORTHO05D004509 9.9e-06 54.3 59 52.5
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 9.9e-06 54.3 68 42.6
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 9.9e-06 54.3 85 41.2


User provided reference genes

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