Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 2.2e-74 282.3 157 100.0
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 8.4e-74 280.4 157 99.4
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 1.9e-73 279.3 157 98.7
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 1.9e-73 279.3 157 98.7
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 2.4e-73 278.9 157 98.1
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 1.0e-71 273.5 161 96.3
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 9.0e-68 260.4 161 91.3
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 3.5e-64 248.4 161 86.3
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 7.6e-59 230.7 161 82.6
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 1.4e-57 226.5 158 77.8
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 4.2e-57 224.9 159 81.1
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 2.7e-56 222.2 161 78.3
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 1.3e-55 219.9 161 78.9
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 7.7e-51 204.1 156 72.4
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 9.7e-46 187.2 154 69.5
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.4e-44 183.3 155 68.4
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 1.4e-39 166.8 154 61.0
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 1.8e-39 166.4 149 63.8
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 1.8e-39 166.4 150 60.0
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 5.2e-39 164.9 157 59.2
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 2.6e-38 162.5 150 60.0
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 2.6e-38 162.5 133 63.2
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 2.6e-38 162.5 147 60.5
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 5.7e-38 161.4 157 55.4
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 9.7e-38 160.6 148 60.8
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 9.7e-38 160.6 157 58.0
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 2.2e-37 159.5 149 58.4
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 2.2e-37 159.5 130 63.8
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 2.2e-37 159.5 142 62.0
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 4.8e-37 158.3 150 58.7
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 6.3e-37 157.9 147 58.5
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 6.3e-37 157.9 151 58.9
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 8.2e-37 157.5 132 62.9
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 1.1e-36 157.1 116 70.7
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 1.4e-36 156.8 142 62.0
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.8e-36 156.4 157 58.6
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 1.8e-36 156.4 157 58.6
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 2.4e-36 156.0 157 55.4
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 4.1e-36 155.2 153 58.2
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 4.1e-36 155.2 137 60.6
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 5.3e-36 154.8 142 59.9
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 5.3e-36 154.8 130 63.1
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 5.3e-36 154.8 146 60.3
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 7.0e-36 154.5 157 57.3
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 7.0e-36 154.5 144 60.4
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 7.0e-36 154.5 154 55.8
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 1.2e-35 153.7 158 55.7
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 1.2e-35 153.7 112 69.6
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 1.2e-35 153.7 137 60.6
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 1.6e-35 153.3 157 55.4
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.6e-35 153.3 140 58.6
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.6e-35 153.3 140 58.6
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 4.5e-35 151.8 128 60.9
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 5.9e-35 151.4 128 60.9
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 7.7e-35 151.0 152 53.9
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 1.0e-34 150.6 149 54.4
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 1.0e-34 150.6 131 60.3
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 1.0e-34 150.6 145 56.6
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 1.3e-34 150.2 109 70.6
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 1.3e-34 150.2 125 64.0
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 2.2e-34 149.4 131 61.8
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 2.9e-34 149.1 142 57.0
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 3.8e-34 148.7 154 53.2
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 3.8e-34 148.7 146 60.3
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 3.8e-34 148.7 131 60.3
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 6.5e-34 147.9 126 61.9
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 8.5e-34 147.5 149 53.7
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 1.1e-33 147.1 155 54.2
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 1.5e-33 146.7 145 55.9
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.5e-33 146.7 151 52.3
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 1.5e-33 146.7 157 51.6
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 1.9e-33 146.4 137 55.5
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.9e-33 146.4 152 51.3
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 2.5e-33 146.0 129 58.1
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 2.5e-33 146.0 148 56.1
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 2.5e-33 146.0 152 51.3
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 3.2e-33 145.6 164 51.8
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 4.2e-33 145.2 145 56.6
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 5.5e-33 144.8 141 56.0
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 5.5e-33 144.8 152 51.3
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 5.5e-33 144.8 141 55.3
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 7.2e-33 144.4 142 54.9
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 9.4e-33 144.1 141 54.6
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 9.4e-33 144.1 141 54.6
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 9.4e-33 144.1 152 50.7
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 1.2e-32 143.7 148 55.4
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 2.1e-32 142.9 125 57.6
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 2.1e-32 142.9 154 53.9
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 3.6e-32 142.1 128 57.0
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 3.6e-32 142.1 128 57.0
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 3.6e-32 142.1 125 60.8
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 1.4e-31 140.2 147 53.1
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 1.8e-31 139.8 157 50.3
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 2.3e-31 139.4 142 54.2
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 2.3e-31 139.4 150 48.7
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 2.3e-31 139.4 133 57.1
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 4.0e-31 138.7 137 53.3
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 6.7e-31 137.9 156 49.4
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 8.8e-31 137.5 128 58.6
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 8.8e-31 137.5 146 53.4
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 2.0e-30 136.3 158 52.5
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 4.4e-30 135.2 138 52.9
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 9.7e-30 134.0 136 52.9
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.2e-29 132.9 163 47.9
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 1.4e-28 130.2 126 59.5
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 2.4e-28 129.4 139 51.8
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.4e-28 129.4 172 45.3
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 5.3e-28 128.3 155 48.4
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 1.6e-27 126.7 138 50.7
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 3.5e-27 125.6 218 41.3
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 4.5e-27 125.2 146 50.0
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 7.7e-27 124.4 104 61.5
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 7.2e-25 117.9 112 56.2
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 1.3e-21 107.1 76 69.7
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 6.3e-21 104.8 76 68.4
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 2.3e-18 96.3 98 51.0
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 3.0e-15 85.9 70 62.9
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 6.8e-15 84.7 158 37.3
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.2e-14 84.0 122 42.6
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.5e-14 83.6 137 39.4
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 3.7e-13 79.0 95 46.3
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 1.0e-10 70.9 67 52.2
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.5e-06 57.0 127 32.3


User provided reference genes

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