Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 0.0e+00 1104.0 614 100.0
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 0.0e+00 1078.2 614 98.2
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 0.0e+00 1075.8 614 98.0
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.2e-285 986.1 620 88.5
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 6.0e-285 983.8 621 90.8
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 3.5e-248 861.7 645 80.5
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 7.5e-203 711.1 678 63.7
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 6.2e-197 691.4 680 62.1
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 4.0e-196 688.7 679 62.4
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 5.4e-193 678.3 683 62.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 1.7e-186 656.8 676 63.6
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 6.2e-181 638.3 606 65.5
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 3.5e-168 595.9 628 65.6
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.5e-150 537.3 628 56.5
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.3e-119 433.7 620 50.6
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 3.3e-113 413.3 600 51.0
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 5.8e-86 322.8 709 39.9
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-82 310.8 633 40.0
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 8.1e-80 302.4 617 39.5
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.4e-79 301.6 695 39.3
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 4.4e-78 296.6 660 39.4
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 5.4e-76 289.7 674 38.0
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 7.1e-76 289.3 616 39.1
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.7e-74 284.6 712 38.2
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 6.6e-74 282.7 733 37.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 5.6e-73 279.6 532 41.9
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 2.1e-72 277.7 736 35.1
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.1e-71 275.4 680 35.6
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 9.0e-71 272.3 540 40.2
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.4e-70 270.0 710 35.5
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 8.4e-69 265.8 721 35.8
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.4e-69 265.8 721 35.8
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.4e-68 264.2 449 42.1
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.2e-68 263.5 706 36.3
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 9.3e-68 262.3 613 39.6
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.6e-67 261.5 730 35.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 3.5e-67 260.4 694 35.0
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 7.9e-67 259.2 176 84.7
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.0e-66 257.3 758 33.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.9e-65 254.6 650 36.0
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 2.5e-65 254.2 647 37.9
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.5e-65 254.2 705 33.9
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.6e-64 251.5 690 35.5
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.1e-63 248.8 735 35.8
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.1e-63 248.8 697 34.3
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 2.4e-63 247.7 740 33.4
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 4.0e-63 246.9 723 32.9
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 5.3e-63 246.5 689 33.2
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.0e-62 244.6 709 34.7
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 2.6e-62 244.2 737 33.8
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.8e-62 243.0 662 36.4
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 9.9e-62 242.3 576 38.9
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.9e-61 240.7 667 35.7
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 2.4e-60 237.7 663 34.8
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 4.2e-60 236.9 740 33.9
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.4e-60 236.5 744 33.5
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.2e-59 235.3 663 31.8
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 3.5e-59 233.8 434 44.2
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.5e-59 233.8 666 33.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 7.9e-59 232.6 675 32.6
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.8e-58 231.5 726 34.6
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 5.6e-57 226.5 511 40.5
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 7.4e-57 226.1 573 38.0
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.8e-56 223.4 758 31.1
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 4.8e-56 223.4 518 39.4
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 8.1e-56 222.6 526 40.1
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.1e-55 222.2 534 38.8
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.4e-55 221.9 641 33.7
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.8e-55 221.5 503 37.8
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 3.1e-55 220.7 542 39.3
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 3.1e-55 220.7 674 31.2
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.0e-55 220.3 658 33.1
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 5.3e-55 219.9 709 32.2
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.2e-54 218.8 525 36.4
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.5e-54 218.4 721 34.8
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.5e-54 216.9 764 31.5
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 5.8e-54 216.5 619 33.4
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 5.8e-54 216.5 677 31.2
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 7.6e-54 216.1 674 30.7
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.3e-53 215.3 770 32.1
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.3e-53 215.3 673 34.9
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.5e-51 207.2 671 32.0
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 6.0e-51 206.5 511 36.0
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 4.3e-49 200.3 553 34.4
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.8e-48 196.8 771 30.4
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.8e-48 196.8 518 35.5
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.5e-46 191.8 622 32.2
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.3e-45 188.7 511 34.2
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.2e-45 188.0 630 32.5
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 6.5e-45 186.4 646 32.7
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 8.4e-45 186.0 692 32.4
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 2.5e-44 184.5 776 28.9
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.2e-44 184.1 241 45.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 5.5e-44 183.3 732 31.3
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 1.0e-42 179.1 205 56.6
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 3.0e-42 177.6 581 33.0
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.0e-42 177.6 796 27.8
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 6.7e-42 176.4 734 29.3
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 8.7e-42 176.0 523 32.5
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.1e-41 175.6 485 35.9
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 2.5e-41 174.5 354 39.0
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 3.3e-41 174.1 624 29.8
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 9.7e-41 172.6 718 29.7
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.7e-40 170.6 608 31.4
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.7e-37 161.8 620 30.0
A08p12810 Brassica napus HOM05D004882 ORTHO05D005551 6.5e-37 159.8 136 72.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 6.5e-37 159.8 157 61.1
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 8.5e-37 159.5 663 32.3
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 3.2e-36 157.5 608 28.1
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 5.1e-34 150.2 499 34.5
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 6.7e-34 149.8 614 30.6
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.6e-30 137.9 812 26.2
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.9e-29 134.4 628 31.2
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.8e-29 134.0 617 30.6
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.4e-28 132.1 543 29.3
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.4e-26 125.6 699 27.3
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 6.7e-26 123.2 506 27.9
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.5e-25 122.1 74 79.7
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 2.0e-25 121.7 406 33.7
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 8.2e-24 116.3 585 27.0
A02p22620 Brassica napus HOM05D016870 ORTHO05D005551 6.1e-19 100.1 76 75.0
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.8e-16 91.3 71 59.2
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 3.8e-13 80.9 408 28.4
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 6.5e-13 80.1 132 43.9
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.6e-11 75.5 80 50.0
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.5e-09 68.9 40 75.0
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 7.5e-09 66.6 59 57.6
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.7e-08 65.5 111 44.1
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.4e-07 61.6 87 39.1
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 5.4e-07 60.5 63 49.2
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 1.2e-06 59.3 65 53.8
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 1.2e-06 59.3 119 37.8
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.6e-06 58.9 440 25.0
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.9e-06 57.0 296 25.0


User provided reference genes

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