Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50429 Brassica carinata HOM05D003010 ORTHO05D003623 4.0e-45 184.5 99 100.0
BcaNung00140 Brassica carinata HOM05D003010 ORTHO05D003623 6.8e-37 157.1 102 84.3
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 1.8e-34 149.1 80 96.2
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 5.4e-34 147.5 80 95.0
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.6e-30 136.0 87 83.9
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 1.2e-28 129.8 88 79.5
AT4G16840 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 7.0e-26 120.6 87 75.9
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 2.3e-24 115.5 90 76.7
BcaC07g38027 Brassica carinata HOM05D001429 ORTHO05D001420 5.0e-24 114.4 90 75.6
BcaB04g18394 Brassica carinata HOM05D001429 ORTHO05D001420 1.1e-23 113.2 90 73.3
C03p22900 Brassica napus HOM05D003010 ORTHO05D003623 3.3e-23 111.7 89 69.7
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 3.6e-22 108.2 84 71.4
A08p12780 Brassica napus HOM05D003010 ORTHO05D003623 1.1e-21 106.7 87 74.7
Aa31LG9G15070 Aethionema arabicum HOM05D003010 ORTHO05D003623 2.6e-20 102.1 90 62.2
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 2.6e-20 102.1 84 66.7
BcaB01g03891 Brassica carinata HOM05D003010 ORTHO05D003623 3.4e-20 101.7 84 69.0
CARHR223470 Cardamine hirsuta HOM05D003010 ORTHO05D003623 3.4e-20 101.7 80 72.5
CARHR129910 Cardamine hirsuta HOM05D003010 ORTHO05D003623 4.4e-20 101.3 84 69.0
BcaC01g05717 Brassica carinata HOM05D003010 ORTHO05D003623 1.4e-18 96.3 84 65.5
Aa31LG2G13030 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.2e-17 93.2 86 62.8
AL4G31750 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 4.6e-17 91.3 84 61.9
BolC8t48419H Brassica oleracea HOM05D003010 ORTHO05D003623 6.0e-17 90.9 79 72.2
AT2G35658 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 1.0e-16 90.1 84 60.7
BolC3t14689H Brassica oleracea HOM05D003010 ORTHO05D003623 1.7e-16 89.4 80 65.0
A03p19640 Brassica napus HOM05D003010 ORTHO05D003623 6.6e-16 87.4 80 62.5
BraA03t11217Z Brassica rapa HOM05D003010 ORTHO05D003623 6.6e-16 87.4 80 62.5
C01p25510 Brassica napus HOM05D000001 ORTHO05D009942 4.3e-15 84.7 80 67.5
Sp4g17920 Schrenkiella parvula HOM05D003010 ORTHO05D003623 6.2e-14 80.9 69 66.7
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.1e-13 80.1 88 52.3
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.8e-13 79.3 78 55.1
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 4.4e-12 74.7 83 53.0
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 4.4e-12 74.7 86 50.0
Eucgr.E00369 Eucalyptus grandis HOM05D003010 ORTHO05D003623 5.8e-12 74.3 91 47.3
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.7e-11 72.8 85 51.8
Potri.001G152700 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.7e-11 72.8 84 50.0
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 2.2e-11 72.4 86 46.5
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 2.9e-11 72.0 80 52.5
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 3.7e-11 71.6 81 54.3
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 1.1e-10 70.1 81 45.7
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 1.4e-10 69.7 95 47.4
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 1.9e-10 69.3 83 47.0
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.4e-10 68.9 87 48.3
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 2.4e-10 68.9 84 50.0
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.2e-10 68.6 87 48.3
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 5.4e-10 67.8 87 44.8
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 5.4e-10 67.8 78 51.3
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 5.4e-10 67.8 70 51.4
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 7.1e-10 67.4 80 50.0
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 9.2e-10 67.0 85 49.4
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 1.6e-09 66.2 78 51.3
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 1.6e-09 66.2 81 48.1
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.6e-09 66.2 82 48.8
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.1e-09 65.9 46 60.9
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 2.7e-09 65.5 87 44.8
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 3.5e-09 65.1 88 46.6
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 3.5e-09 65.1 78 50.0
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 4.6e-09 64.7 81 46.9
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 4.6e-09 64.7 89 47.2
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 4.6e-09 64.7 78 47.4
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 4.6e-09 64.7 78 47.4
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 6.0e-09 64.3 43 65.1
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 6.0e-09 64.3 82 48.8
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 6.0e-09 64.3 84 46.4
Glyma.01G205800 Glycine max HOM05D003010 ORTHO05D003623 7.8e-09 63.9 86 47.7
Medtr5g013240 Medicago truncatula HOM05D003010 ORTHO05D003623 7.8e-09 63.9 55 52.7
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 1.0e-08 63.5 86 45.3
Lsat_1_v5_gn_4_126000 Lactuca sativa HOM05D003010 ORTHO05D003623 1.0e-08 63.5 84 40.5
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.0e-08 63.5 86 46.5
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 1.0e-08 63.5 78 46.2
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 1.3e-08 63.2 78 46.2
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.7e-08 62.8 80 46.2
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 1.7e-08 62.8 89 40.4
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 1.7e-08 62.8 86 46.5
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 1.7e-08 62.8 43 62.8
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.7e-08 62.8 43 62.8
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.7e-08 62.8 43 62.8
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.7e-08 62.8 43 62.8
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.7e-08 62.8 78 50.0
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 1.7e-08 62.8 80 47.5
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 1.7e-08 62.8 87 46.0
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 2.3e-08 62.4 80 46.2
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 2.3e-08 62.4 84 42.9
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.3e-08 62.4 78 48.7
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 2.3e-08 62.4 90 44.4
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 3.0e-08 62.0 85 43.5
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 3.0e-08 62.0 84 42.9
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 3.0e-08 62.0 54 51.9
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 3.0e-08 62.0 82 47.6
Atru.chr9.1234 Acer truncatum HOM05D003010 ORTHO05D003623 3.9e-08 61.6 48 54.2
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 3.9e-08 61.6 81 46.9
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 3.9e-08 61.6 97 45.4
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 3.9e-08 61.6 84 44.0
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 3.9e-08 61.6 84 44.0
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 5.1e-08 61.2 83 45.8
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 5.1e-08 61.2 85 43.5
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 5.1e-08 61.2 43 62.8
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 5.1e-08 61.2 78 46.2
Phvul.002G000700 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 5.1e-08 61.2 83 43.4
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 6.6e-08 60.8 86 45.3
HanXRQChr17g0550011 Helianthus annuus HOM05D003010 ORTHO05D003623 6.6e-08 60.8 81 42.0
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 6.6e-08 60.8 97 42.3
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 8.6e-08 60.5 80 46.2
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 8.6e-08 60.5 83 42.2
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 8.6e-08 60.5 79 44.3
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 1.1e-07 60.1 80 43.8
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.1e-07 60.1 78 47.4
arahy.Tifrunner.gnm1.ann1.AIXL5Y Arachis hypogaea HOM05D003010 ORTHO05D003623 1.5e-07 59.7 51 58.8
arahy.Tifrunner.gnm1.ann1.YNCC4F Arachis hypogaea HOM05D003010 ORTHO05D003623 1.5e-07 59.7 51 58.8
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 1.5e-07 59.7 83 44.6
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 1.5e-07 59.7 87 42.5
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.9e-07 59.3 81 44.4
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 1.9e-07 59.3 78 44.9
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.5e-07 58.9 85 48.2
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 2.5e-07 58.9 85 48.2
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 2.5e-07 58.9 85 42.4
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 2.5e-07 58.9 84 39.3
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 3.3e-07 58.5 81 42.0
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 3.3e-07 58.5 83 41.0
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 3.3e-07 58.5 81 43.2
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 3.3e-07 58.5 85 42.4
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 3.3e-07 58.5 78 43.6
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 4.3e-07 58.2 84 44.0
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 4.3e-07 58.2 43 58.1
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 4.3e-07 58.2 81 43.2
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 4.3e-07 58.2 86 41.9
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 5.6e-07 57.8 83 43.4
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 5.6e-07 57.8 88 42.0
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 9.5e-07 57.0 82 45.1
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 9.5e-07 57.0 78 38.5
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.5e-07 57.0 84 44.0
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 9.5e-07 57.0 85 45.9
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 9.5e-07 57.0 78 41.0
AUR62018864 Chenopodium quinoa HOM05D003010 ORTHO05D003623 1.2e-06 56.6 36 69.4
Lalb_Chr09g0324231 Lupinus albus HOM05D003010 ORTHO05D003623 1.2e-06 56.6 78 42.3
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.2e-06 56.6 88 42.0
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 1.6e-06 56.2 87 42.5
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.6e-06 56.2 84 42.9
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 1.6e-06 56.2 85 45.9
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 2.1e-06 55.8 82 41.5
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 2.1e-06 55.8 82 41.5
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 2.1e-06 55.8 82 43.9
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.1e-06 55.8 82 43.9
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 2.1e-06 55.8 82 43.9
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 2.1e-06 55.8 82 43.9
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 2.1e-06 55.8 90 40.0
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 2.1e-06 55.8 82 45.1
Zm00001eb276840 Zea mays HOM05D065303 ORTHO05D049753 2.1e-06 55.8 80 40.0
ClCG00G004980 Citrullus lanatus HOM05D003010 ORTHO05D003623 2.8e-06 55.5 85 40.0
ClCG10G002350 Citrullus lanatus HOM05D003010 ORTHO05D003623 2.8e-06 55.5 85 40.0
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 2.8e-06 55.5 90 40.0
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 4.7e-06 54.7 80 46.2
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 4.7e-06 54.7 80 46.2
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 4.7e-06 54.7 85 40.0
Sed0000436 Sechium edule HOM05D003010 ORTHO05D003623 4.7e-06 54.7 91 38.5
SGA_v2.0_scaffold104G30217 Striga asiatica HOM05D003010 ORTHO05D003623 4.7e-06 54.7 78 41.0
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 6.2e-06 54.3 84 41.7
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 8.1e-06 53.9 80 46.2
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 8.1e-06 53.9 90 38.9
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 8.1e-06 53.9 83 45.8
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 8.1e-06 53.9 92 39.1
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 8.1e-06 53.9 92 39.1
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 8.1e-06 53.9 91 39.6
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 8.1e-06 53.9 85 40.0


User provided reference genes

Program Settings