Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 7.4e-43 176.8 89 100.0
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 5.5e-38 160.6 89 89.9
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-28 129.0 76 85.5
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.8e-28 129.0 76 85.5
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 1.2e-27 126.3 76 82.9
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 5.7e-27 124.0 76 82.9
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 5.3e-25 117.5 76 77.6
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 7.7e-24 113.6 89 70.8
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.7e-23 112.5 82 70.7
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.5e-22 107.5 73 69.9
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 5.5e-22 107.5 71 76.1
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 7.2e-22 107.1 71 74.6
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 7.2e-22 107.1 71 74.6
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 7.2e-22 107.1 71 74.6
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 7.2e-22 107.1 71 73.2
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 9.4e-22 106.7 78 67.9
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.6e-21 105.9 72 70.8
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 2.1e-21 105.5 71 74.6
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.1e-21 105.5 71 73.2
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.0e-20 101.3 73 65.8
C07p36590 Brassica napus HOM05D035163 ORTHO05D012808 3.4e-19 98.2 64 78.1
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 5.7e-19 97.4 66 71.2
C09p04090 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-17 93.2 52 90.4
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 2.0e-16 89.0 65 63.1
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 2.0e-16 89.0 65 63.1
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.7e-16 88.6 65 63.1
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.7e-16 88.6 65 63.1
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 4.5e-16 87.8 65 61.5
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 4.5e-16 87.8 65 61.5
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 5.9e-16 87.4 66 62.1
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.0e-15 86.7 65 63.1
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.0e-15 86.7 65 61.5
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 3.8e-15 84.7 65 61.5
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 5.0e-15 84.3 65 60.0
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 6.6e-15 84.0 60 65.0
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.4e-12 76.3 75 49.3
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 8.9e-12 73.6 70 52.9
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.2e-11 73.2 61 54.1
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 2.0e-11 72.4 63 52.4
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.0e-11 72.4 65 52.3
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 3.4e-11 71.6 74 51.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 4.4e-11 71.2 61 59.0
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 4.4e-11 71.2 60 51.7
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 4.4e-11 71.2 60 51.7
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 5.7e-11 70.9 76 46.1
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 5.7e-11 70.9 61 54.1
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 7.5e-11 70.5 63 50.8
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 9.8e-11 70.1 60 50.0
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.3e-10 69.7 63 54.0
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.3e-10 69.7 74 47.3
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.2e-10 68.9 72 48.6
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 2.2e-10 68.9 59 59.3
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 2.8e-10 68.6 61 50.8
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.8e-10 68.6 72 50.0
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.8e-10 68.6 72 48.6
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.8e-10 68.6 63 52.4
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.9e-10 67.8 59 54.2
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 6.3e-10 67.4 63 52.4
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.3e-10 67.4 70 50.0
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 8.3e-10 67.0 82 43.9
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.1e-09 66.6 59 50.8
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.4e-09 66.2 60 46.7
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.4e-09 66.2 61 52.5
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 1.4e-09 66.2 59 50.8
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-09 66.2 59 50.8
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.4e-09 66.2 65 47.7
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.4e-09 66.2 65 47.7
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.4e-09 66.2 79 39.2
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 1.4e-09 66.2 54 57.4
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 1.4e-09 66.2 72 47.2
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.8e-09 65.9 65 47.7
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.8e-09 65.9 59 52.5
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.8e-09 65.9 58 55.2
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 2.4e-09 65.5 63 49.2
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.4e-09 65.5 55 58.2
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.1e-09 64.7 59 49.2
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 4.1e-09 64.7 63 44.4
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.1e-09 64.7 58 53.4
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 5.4e-09 64.3 64 45.3
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 5.4e-09 64.3 65 49.2
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 5.4e-09 64.3 72 43.1
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 5.4e-09 64.3 76 43.4
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 5.4e-09 64.3 76 43.4
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 5.4e-09 64.3 56 53.6
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.0e-09 63.9 72 45.8
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 7.0e-09 63.9 59 55.9
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 9.2e-09 63.5 54 57.4
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.2e-08 63.2 61 49.2
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.2e-08 63.2 76 47.4
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.7e-08 62.0 57 47.4
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 5.9e-08 60.8 54 50.0
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 7.8e-08 60.5 59 47.5
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 1.0e-07 60.1 58 48.3
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.0e-07 60.1 69 42.0
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 1.3e-07 59.7 72 44.4
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.3e-07 59.7 54 50.0
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.3e-07 59.7 63 36.5
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 1.7e-07 59.3 65 49.2
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 3.9e-07 58.2 59 50.8
C01p37870 Brassica napus HOM05D000411 ORTHO05D012808 6.6e-07 57.4 32 81.2
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 1.1e-06 56.6 58 46.6
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 1.1e-06 56.6 54 51.9
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.5e-06 56.2 69 40.6
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.5e-06 55.5 67 43.3
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 2.5e-06 55.5 75 42.7
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 4.3e-06 54.7 66 40.9
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 7.3e-06 53.9 74 36.5


User provided reference genes

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