Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50373 Brassica carinata HOM05D007031 ORTHO05D008815 3.2e-83 311.6 148 100.0
BcaNung00171 Brassica carinata HOM05D007031 ORTHO05D008815 1.3e-79 299.7 148 95.3
BolC1t02559H Brassica oleracea HOM05D007031 ORTHO05D008815 4.8e-79 297.7 147 96.6
BraA01t02001Z Brassica rapa HOM05D007031 ORTHO05D008815 8.2e-79 297.0 147 97.3
CARHR223050 Cardamine hirsuta HOM05D007031 ORTHO05D008815 3.1e-70 268.5 148 84.5
AT4G16566 Arabidopsis thaliana HOM05D007031 ORTHO05D008815 1.2e-69 266.5 146 84.2
Thhalv10026497m.g Eutrema salsugineum HOM05D007031 ORTHO05D008815 1.2e-69 266.5 151 84.8
AL7G38260 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 2.6e-69 265.4 148 83.8
Carub.0007s2484 Capsella rubella HOM05D007031 ORTHO05D008815 2.6e-69 265.4 146 84.9
THA.LOC104815489 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 4.8e-63 244.6 145 79.3
Aa31LG2G12690 Aethionema arabicum HOM05D007031 ORTHO05D008815 4.1e-62 241.5 149 75.2
BcaNung02861 Brassica carinata HOM05D007031 ORTHO05D008815 9.1e-62 240.4 149 78.5
A01p20650 Brassica napus HOM05D007031 ORTHO05D008815 2.0e-61 239.2 117 97.4
C01p26150 Brassica napus HOM05D007031 ORTHO05D008815 1.3e-60 236.5 125 90.4
AL7G38210 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 5.0e-60 234.6 131 84.0
TWI60G0154 Tripterygium wilfordii HOM05D007031 ORTHO05D008815 2.5e-59 232.3 143 77.6
Duzib205G0920 Durio zibethinus HOM05D007031 ORTHO05D008815 1.0e-57 226.9 141 75.2
CSS0040909 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 1.4e-57 226.5 149 72.5
Gohir.D08G188900 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.4e-57 226.5 144 74.3
Gorai.004G199000 Gossypium raimondii HOM05D007031 ORTHO05D008815 1.4e-57 226.5 144 74.3
Dinv21635 Davidia involucrata HOM05D007031 ORTHO05D008815 4.0e-57 224.9 143 74.1
RcHm_v2.0_Chr7g0203161 Rosa chinensis HOM05D007031 ORTHO05D008815 5.2e-57 224.6 148 75.0
MSTRG.13772 Avicennia marina HOM05D007031 ORTHO05D008815 8.8e-57 223.8 143 72.7
FAN18G3883 Fragaria x ananassa HOM05D007031 ORTHO05D008815 8.8e-57 223.8 151 74.2
Ciclev10022693m.g Citrus clementina HOM05D007031 ORTHO05D008815 1.2e-56 223.4 148 75.0
TAR636G3191 Trochodendron aralioides HOM05D007031 ORTHO05D008815 3.3e-56 221.9 146 75.3
FvH4_5g18810 Fragaria vesca HOM05D007031 ORTHO05D008815 7.5e-56 220.7 147 74.8
FAN13G0327 Fragaria x ananassa HOM05D007031 ORTHO05D008815 9.7e-56 220.3 151 73.5
FAN08G1843 Fragaria x ananassa HOM05D007031 ORTHO05D008815 1.3e-55 219.9 148 72.3
Cc08_g12500 Coffea canephora HOM05D007031 ORTHO05D008815 2.2e-55 219.2 138 74.6
Lsat_1_v5_gn_5_187960 Lactuca sativa HOM05D007031 ORTHO05D008815 6.3e-55 217.6 145 73.1
Solyc08g007380.4 Solanum lycopersicum HOM05D007031 ORTHO05D008815 1.8e-54 216.1 141 70.9
Sopen08g003330 Solanum pennellii HOM05D007031 ORTHO05D008815 1.8e-54 216.1 141 70.9
Potri.003G076400 Populus trichocarpa HOM05D007031 ORTHO05D008815 2.0e-53 212.6 143 72.7
Sp7g15180 Schrenkiella parvula HOM05D007031 ORTHO05D008815 2.0e-53 212.6 151 71.5
CAN.G1227.14 Capsicum annuum HOM05D007031 ORTHO05D008815 3.5e-53 211.8 141 68.1
Actinidia14432 Actinidia chinensis HOM05D007031 ORTHO05D008815 5.9e-53 211.1 143 68.5
Eucgr.E00427 Eucalyptus grandis HOM05D007031 ORTHO05D008815 5.9e-53 211.1 142 69.7
PSO386G0128 Papaver somniferum HOM05D007031 ORTHO05D008815 1.3e-52 209.9 144 69.4
ECA232G3888 Erigeron canadensis HOM05D007031 ORTHO05D008815 1.7e-52 209.5 143 65.7
Gohir.A08G170700 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.7e-52 209.5 148 70.3
Cfa012711 Carpinus fangiana HOM05D007031 ORTHO05D008815 2.2e-52 209.1 144 69.4
Lj2A217G30 Lonicera japonica HOM05D007031 ORTHO05D008815 2.2e-52 209.1 143 68.5
Migut.E00966 Erythranthe guttata HOM05D007031 ORTHO05D008815 3.8e-52 208.4 140 70.0
CiPaw.12G109600 Carya illinoinensis HOM05D007031 ORTHO05D008815 5.0e-52 208.0 146 69.2
Migut.E01683 Erythranthe guttata HOM05D007031 ORTHO05D008815 5.0e-52 208.0 140 70.0
BolC7t45328H Brassica oleracea HOM05D007031 ORTHO05D008815 6.5e-52 207.6 135 76.3
PSO724G0679 Papaver somniferum HOM05D007031 ORTHO05D008815 8.5e-52 207.2 136 70.6
CANSAT21G0077 Cannabis sativa HOM05D007031 ORTHO05D008815 1.5e-51 206.5 135 70.4
Sed0003740 Sechium edule HOM05D007031 ORTHO05D008815 1.5e-51 206.5 142 69.0
Aqoxy5G01014 Aquilegia oxysepala HOM05D007031 ORTHO05D008815 2.5e-51 205.7 143 69.2
TPR.G25905 Trifolium pratense HOM05D007031 ORTHO05D008815 2.5e-51 205.7 141 66.7
CSS0002961 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 3.2e-51 205.3 152 66.4
CDE09G0628 Ceratophyllum demersum HOM05D005321 ORTHO05D006360 3.2e-51 205.3 137 71.5
Phvul.002G062701 Phaseolus vulgaris HOM05D007031 ORTHO05D008815 1.2e-50 203.4 144 66.0
arahy.Tifrunner.gnm1.ann1.R85P7C Arachis hypogaea HOM05D007031 ORTHO05D008815 3.6e-50 201.8 143 65.7
CsaV3_5G004200 Cucumis sativus L. HOM05D007031 ORTHO05D008815 3.6e-50 201.8 143 71.3
Lj2g0002187 Lotus japonicus HOM05D007031 ORTHO05D008815 3.6e-50 201.8 150 64.7
Glyma.11G032300 Glycine max HOM05D007031 ORTHO05D008815 4.7e-50 201.4 144 65.3
arahy.Tifrunner.gnm1.ann1.WL6NYT Arachis hypogaea HOM05D007031 ORTHO05D008815 6.1e-50 201.1 143 65.7
Hma1.2p1_0316F.1_g123210 Hydrangea macrophylla HOM05D007031 ORTHO05D008815 2.3e-49 199.1 118 79.7
DCAR_027778 Daucus carota HOM05D007031 ORTHO05D008815 4.0e-49 198.4 137 67.2
Lalb_Chr09g0324411 Lupinus albus HOM05D007031 ORTHO05D008815 4.0e-49 198.4 140 67.9
unitig_699.g19776 Utricularia gibba HOM05D007031 ORTHO05D008815 8.8e-49 197.2 117 76.9
HPP92_027426 Vanilla planifolia HOM05D007031 ORTHO05D008815 1.5e-48 196.4 146 63.0
Atru.chr9.1322 Acer truncatum HOM05D007031 ORTHO05D008815 2.0e-48 196.1 116 77.6
Psat2g177560 Pisum sativum HOM05D007031 ORTHO05D008815 3.4e-48 195.3 143 65.0
HPP92_021039 Vanilla planifolia HOM05D007031 ORTHO05D008815 3.4e-48 195.3 146 62.3
Os04g0535400 Oryza sativa ssp. japonica HOM05D007031 ORTHO05D008815 9.8e-48 193.7 137 66.4
EL10Ac5g13074 Beta vulgaris HOM05D007031 ORTHO05D008815 3.7e-47 191.8 175 54.3
MBI04_g09491_MAGBIO Magnolia biondii HOM05D007031 ORTHO05D008815 3.7e-47 191.8 117 77.8
ClCG01G004020 Citrullus lanatus HOM05D007031 ORTHO05D008815 4.8e-47 191.4 170 57.6
Peaxi162Scf00102g01143 Petunia axillaris HOM05D007031 ORTHO05D008815 9.1e-46 187.2 117 74.4
SEGI_08804 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 1.6e-45 186.4 142 62.0
vmacro16391 Vaccinium macrocarpon HOM05D007031 ORTHO05D008815 6.5e-44 181.0 104 78.8
ATR0317G125 Amborella trichopoda HOM05D007031 ORTHO05D008815 1.5e-43 179.9 137 62.8
FAN14G5160 Fragaria x ananassa HOM05D007031 ORTHO05D008815 1.2e-42 176.8 143 60.1
MD04G1063700 Malus domestica HOM05D007031 ORTHO05D008815 2.1e-42 176.0 116 74.1
Manes.02G039100 Manihot esculenta HOM05D007031 ORTHO05D008815 2.3e-41 172.6 115 73.0
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 8.9e-41 170.6 115 72.2
QL12p012249 Quercus lobata HOM05D007031 ORTHO05D008815 5.7e-40 167.9 256 40.2
Hund14533 Selenicereus undatus HOM05D007031 ORTHO05D008815 9.8e-40 167.2 101 77.2
Sabra03G0047000 Salix brachista HOM05D007031 ORTHO05D008815 1.3e-39 166.8 161 55.9
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 2.2e-39 166.0 114 71.1
MELO3C005535.2 Cucumis melo HOM05D007031 ORTHO05D008815 2.8e-39 165.6 101 78.2
VMungo1215G1202 Vigna mungo HOM05D007031 ORTHO05D008815 2.4e-38 162.5 116 64.7
BcaC06g33496 Brassica carinata HOM05D007031 ORTHO05D008815 7.0e-38 161.0 91 85.7
AUR62042788 Chenopodium quinoa HOM05D007031 ORTHO05D008815 1.2e-37 160.2 108 72.2
Prupe.5G068700 Prunus persica HOM05D007031 ORTHO05D008815 1.5e-35 153.3 146 55.5
Zm00001eb427450 Zea mays HOM05D007031 ORTHO05D008815 5.6e-35 151.4 101 65.3
CSS0026472 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 2.1e-34 149.4 149 53.0
CiPaw.11G153700 Carya illinoinensis HOM05D007031 ORTHO05D008815 6.8e-33 144.4 104 67.3
Nitab4.5_0000712g0190 Nicotiana tabacum HOM05D007031 ORTHO05D008815 8.9e-33 144.1 160 48.1
AUR62007512 Chenopodium quinoa HOM05D007031 ORTHO05D008815 7.5e-32 141.0 89 74.2
FAN02G0786 Fragaria x ananassa HOM05D007031 ORTHO05D008815 6.4e-31 137.9 108 66.7
SMO274G0074 Selaginella moellendorffii HOM05D007031 ORTHO05D008815 3.2e-30 135.6 141 46.8
THA.LOC104815507 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 4.1e-30 135.2 75 78.7
Oeu062969.1 Olea europaea HOM05D007031 ORTHO05D008815 2.7e-29 132.5 143 49.7
FAN04G1478 Fragaria x ananassa HOM05D007031 ORTHO05D008815 6.0e-29 131.3 85 71.8
Pp3c5_26880 Physcomitrium patens HOM05D007031 ORTHO05D008815 1.0e-28 130.6 141 43.3
SMO134G0120 Selaginella moellendorffii HOM05D000076 ORTHO05D001279 3.3e-27 125.6 115 50.4
Nn6g33971 Nelumbo nucifera HOM05D007031 ORTHO05D008815 9.5e-27 124.0 117 55.6
GSVIVG01001319001 Vitis vinifera HOM05D007031 ORTHO05D008815 1.6e-26 123.2 87 70.1
Sc22g0000840 Simmondsia chinensis HOM05D007031 ORTHO05D008815 3.6e-26 122.1 84 75.0
SalBow6G3941 Salvia bowleyana HOM05D007031 ORTHO05D008815 3.1e-25 119.0 105 55.2
Haze_07923 Corylus avellana HOM05D007031 ORTHO05D008815 4.0e-25 118.6 142 45.1
MCO15G691 Micromonas commoda HOM05D007031 ORTHO05D008815 7.5e-24 114.4 131 44.3
Pp3c6_3420 Physcomitrium patens HOM05D029721 ORTHO05D008815 1.2e-21 107.1 129 45.7
Thecc.03G252200 Theobroma cacao HOM05D007031 ORTHO05D008815 1.7e-20 103.2 82 64.6
Cre03.g169200 Chlamydomonas reinhardtii HOM05D007031 ORTHO05D008815 1.5e-19 100.1 119 42.9
Nitab4.5_0002225g0110 Nicotiana tabacum HOM05D007031 ORTHO05D008815 1.5e-19 100.1 130 44.6
SEGI_18261 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 1.6e-18 96.7 86 57.0
Medtr5g012525 Medicago truncatula HOM05D007031 ORTHO05D008815 6.2e-18 94.7 60 73.3
FAN05G5584 Fragaria x ananassa HOM05D007031 ORTHO05D008815 9.9e-16 87.4 83 56.6
COL.COLO4_37184 Corchorus olitorius HOM05D007031 ORTHO05D008815 8.4e-07 57.8 46 67.4


User provided reference genes

Program Settings