Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 2.5e-127 458.8 224 100.0
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 2.5e-127 458.8 224 100.0
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 4.4e-100 368.2 228 81.1
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-99 366.3 228 81.6
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 4.8e-99 364.8 228 81.1
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 5.4e-98 361.3 230 80.0
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-97 359.8 230 79.1
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 2.0e-73 279.6 157 86.6
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 1.7e-67 260.0 268 51.9
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 8.3e-67 257.7 237 58.2
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 1.4e-66 256.9 268 51.1
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 1.9e-66 256.5 227 59.5
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-66 256.1 226 59.3
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 3.2e-66 255.8 266 50.8
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 1.0e-64 250.8 253 51.4
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 1.0e-64 250.8 248 52.4
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-64 250.0 242 52.9
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-64 250.0 242 52.9
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 3.3e-63 245.7 296 46.3
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 5.6e-63 245.0 221 58.4
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 2.1e-62 243.0 263 49.0
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.8e-61 240.0 263 48.3
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 2.3e-61 239.6 230 57.0
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-59 233.0 262 46.9
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-58 229.6 253 47.4
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 4.1e-58 228.8 263 46.0
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.4e-58 228.4 262 46.6
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 9.2e-58 227.6 252 46.4
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.5e-57 225.7 271 43.9
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.5e-57 225.7 253 47.8
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 3.9e-56 222.2 253 46.6
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 5.6e-55 218.4 221 55.7
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 6.2e-54 214.9 266 43.6
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 6.2e-54 214.9 266 43.6
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-54 214.5 263 43.3
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.1e-54 214.5 262 45.4
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 3.1e-53 212.6 265 43.0
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.2e-53 211.8 278 44.6
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 5.2e-53 211.8 214 49.5
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 5.8e-52 208.4 215 48.4
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 3.8e-51 205.7 277 43.7
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 4.9e-51 205.3 281 43.1
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.4e-51 204.5 219 49.3
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.6e-49 200.3 246 44.3
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 4.6e-49 198.7 254 43.3
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 1.3e-48 197.2 275 42.2
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.3e-48 196.4 240 47.1
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 6.6e-48 194.9 245 44.5
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 3.1e-45 186.0 224 45.5
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.0e-45 185.7 249 42.6
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.2e-42 176.0 229 45.0
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 9.3e-42 174.5 253 41.1
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 8.7e-40 167.9 262 37.8
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-39 167.5 267 38.2
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.5e-39 167.2 239 40.6
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-38 164.1 276 36.2
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.4e-37 160.6 286 35.7
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.3e-37 158.7 280 37.5
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 4.5e-36 155.6 278 35.3
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 5.8e-36 155.2 248 38.3
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-35 154.1 248 37.5
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 8.4e-35 151.4 235 40.0
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.6e-33 147.1 276 35.1
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 2.7e-33 146.4 234 38.0
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 4.6e-33 145.6 272 34.6
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 4.6e-33 145.6 272 34.6
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 1.8e-32 143.7 180 45.0
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.5e-31 140.6 289 32.5
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-30 136.7 232 35.8
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.4e-29 133.3 286 31.5
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.1e-29 132.9 251 34.3
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 4.0e-29 132.5 118 49.2
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.9e-29 131.7 121 51.2
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-28 131.0 114 50.0
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 3.4e-28 129.4 241 34.0
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 1.0e-27 127.9 234 33.8
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 2.2e-27 126.7 246 36.6
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.9e-26 123.6 128 48.4
BraA03t14092Z Brassica rapa HOM05D007337 ORTHO05D004972 3.2e-26 122.9 111 59.5
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-25 120.2 246 34.1
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 3.5e-25 119.4 239 33.9
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 3.5e-25 119.4 246 34.1
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-24 117.1 242 28.9
Carub.0007s2492 Capsella rubella HOM05D007337 ORTHO05D004972 2.3e-24 116.7 96 62.5
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 5.1e-24 115.5 231 29.0
CARHR215530 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.7e-24 115.2 90 62.2
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.5e-23 113.2 135 46.7
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 5.7e-23 112.1 197 38.1
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 9.6e-23 111.3 243 33.3
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-22 110.5 242 33.5
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 2.8e-22 109.8 267 28.8
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-21 107.5 231 28.1
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.4e-21 107.5 244 27.0
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 5.3e-21 105.5 229 31.0
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 6.9e-21 105.1 274 30.7
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.5e-20 104.0 235 28.1
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.0e-20 103.6 121 42.1
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 2.0e-20 103.6 234 27.4
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.4e-20 102.8 229 28.4
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 5.9e-20 102.1 216 31.9
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 5.9e-20 102.1 243 30.0
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.0e-19 101.3 247 25.5
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.2e-19 100.1 219 29.7
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 2.9e-19 99.8 233 27.0
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 3.8e-19 99.4 253 26.1
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 3.8e-19 99.4 253 26.1
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 3.8e-19 99.4 253 26.1
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 1.4e-18 97.4 237 29.5
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-18 96.7 235 31.1
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 3.2e-18 96.3 236 29.7
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 5.5e-18 95.5 239 26.8
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 7.2e-18 95.1 237 28.7
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 9.3e-18 94.7 269 24.9
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 1.6e-17 94.0 253 25.7
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 1.6e-17 94.0 253 25.7
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 1.6e-17 94.0 224 25.9
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 2.1e-17 93.6 202 26.2
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 2.7e-17 93.2 247 25.1
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 4.6e-17 92.4 221 29.0
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 6.1e-17 92.0 234 26.9
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 6.1e-17 92.0 234 26.9
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.1e-17 92.0 85 50.6
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 1.0e-16 91.3 237 27.4
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.0e-16 91.3 250 26.0
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.3e-16 90.9 214 29.0
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 1.3e-16 90.9 224 26.3
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-16 90.9 255 25.9
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.3e-16 90.9 237 24.5
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 3.0e-16 89.7 201 27.4
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 3.9e-16 89.4 213 27.7
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 3.9e-16 89.4 248 25.8
BcaNung00180 Brassica carinata HOM05D007337 ORTHO05D004972 5.1e-16 89.0 59 71.2
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 6.7e-16 88.6 228 26.3
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 6.7e-16 88.6 259 25.1
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 8.7e-16 88.2 248 24.6
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 1.1e-15 87.8 258 24.0
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 1.9e-15 87.0 221 26.7
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 2.5e-15 86.7 230 25.7
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 3.3e-15 86.3 258 23.6
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 7.4e-15 85.1 201 27.4
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 9.7e-15 84.7 104 39.4
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 1.3e-14 84.3 206 26.7
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.8e-14 83.2 222 24.3
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 8.2e-14 81.6 183 28.4
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 1.4e-13 80.9 109 33.9
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-13 80.9 213 24.9
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 1.4e-13 80.9 233 25.3
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-12 77.4 185 26.5
BolC7t45322H Brassica oleracea HOM05D007337 ORTHO05D004972 3.4e-12 76.3 97 44.3
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 4.5e-12 75.9 233 24.9
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 5.9e-12 75.5 229 22.7
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 2.2e-11 73.6 243 26.3
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 2.2e-11 73.6 243 26.3
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 2.2e-11 73.6 243 26.3
Nitab4.5_0007598g0030 Nicotiana tabacum HOM05D001099 ORTHO05D000958 3.2e-10 69.7 214 23.8
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 5.5e-10 68.9 257 22.6
BcaNung02867 Brassica carinata HOM05D007337 ORTHO05D004972 7.2e-10 68.6 73 46.6
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 2.1e-09 67.0 204 24.0
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 3.6e-09 66.2 106 34.9
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.4e-08 64.3 121 33.9
CAN.G1218.24 Capsicum annuum HOM05D001099 ORTHO05D000958 1.5e-07 60.8 86 31.4
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 1.5e-07 60.8 157 26.1
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 2.6e-07 60.1 86 34.9
QL12p012439 Quercus lobata HOM05D001099 ORTHO05D000958 2.6e-07 60.1 86 34.9
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 3.3e-07 59.7 198 26.3
Atru.chr9.1326 Acer truncatum HOM05D001099 ORTHO05D000958 4.4e-07 59.3 81 34.6
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 4.4e-07 59.3 84 35.7
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-06 56.6 119 26.9
Dinv39136 Davidia involucrata HOM05D001099 ORTHO05D000958 6.3e-06 55.5 81 33.3
unitig_736.g22948 Utricularia gibba HOM05D001099 ORTHO05D000958 6.3e-06 55.5 86 31.4


User provided reference genes

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