Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50363 Brassica carinata HOM05D003385 ORTHO05D003844 7.6e-25 116.3 57 100.0
C01p26210 Brassica napus HOM05D003385 ORTHO05D003844 7.6e-25 116.3 57 100.0
BolC1t02564H Brassica oleracea HOM05D003385 ORTHO05D003844 7.6e-25 116.3 57 100.0
BolC1t02565H Brassica oleracea HOM05D003385 ORTHO05D003844 7.6e-25 116.3 57 100.0
BcaNung00182 Brassica carinata HOM05D003385 ORTHO05D003844 2.5e-23 111.3 57 93.0
BraA01t02007Z Brassica rapa HOM05D003385 ORTHO05D003844 2.7e-22 107.8 57 91.2
A01p20880 Brassica napus HOM05D003385 ORTHO05D003844 3.5e-22 107.5 57 89.5
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 6.7e-21 103.2 56 85.7
CARHR222940 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.2e-17 92.4 55 74.5
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 2.0e-17 91.7 54 72.2
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 4.5e-17 90.5 54 70.4
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 7.6e-17 89.7 54 72.2
A04p27190 Brassica napus HOM05D003385 ORTHO05D003844 7.6e-17 89.7 55 72.7
BraA04t18217Z Brassica rapa HOM05D003385 ORTHO05D003844 7.6e-17 89.7 55 72.7
AL4G31830 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 1.0e-16 89.4 54 70.4
BcaC02g07674 Brassica carinata HOM05D003385 ORTHO05D003844 1.0e-16 89.4 55 72.7
C04p64700 Brassica napus HOM05D003385 ORTHO05D003844 1.0e-16 89.4 55 72.7
BolC4t27948H Brassica oleracea HOM05D003385 ORTHO05D003844 1.0e-16 89.4 55 72.7
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 1.3e-16 89.0 55 74.5
Carub.0007s2496 Capsella rubella HOM05D003385 ORTHO05D003844 2.2e-16 88.2 56 76.8
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 5.0e-16 87.0 54 72.2
AT2G35736 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 8.5e-16 86.3 54 66.7
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 1.4e-15 85.5 54 70.4
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 5.5e-15 83.6 54 70.4
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 7.2e-15 83.2 54 72.2
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 9.3e-15 82.8 54 68.5
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.6e-14 82.0 52 71.2
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 1.6e-14 82.0 54 72.2
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 3.6e-14 80.9 54 66.7
Potri.001G123000 Populus trichocarpa HOM05D003385 ORTHO05D003844 4.6e-14 80.5 54 68.5
AL7G38420 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 6.1e-14 80.1 56 71.4
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 1.8e-13 78.6 54 66.7
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.3e-13 78.2 52 69.2
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 2.3e-13 78.2 54 63.0
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 3.0e-13 77.8 54 64.8
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 5.1e-13 77.0 54 66.7
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 5.1e-13 77.0 52 63.5
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 5.1e-13 77.0 52 63.5
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 6.7e-13 76.6 54 61.1
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 6.7e-13 76.6 52 67.3
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 6.7e-13 76.6 54 64.8
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 6.7e-13 76.6 54 64.8
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 6.7e-13 76.6 54 64.8
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 8.8e-13 76.3 51 62.7
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 8.8e-13 76.3 54 61.1
Solyc08g078790.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 8.8e-13 76.3 54 61.1
Nn6g33988 Nelumbo nucifera HOM05D003385 ORTHO05D003844 1.1e-12 75.9 54 66.7
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 1.1e-12 75.9 51 64.7
PSO210G0600 Papaver somniferum HOM05D003385 ORTHO05D003844 1.1e-12 75.9 52 61.5
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 1.1e-12 75.9 54 61.1
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 1.9e-12 75.1 54 61.1
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 1.9e-12 75.1 52 61.5
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 1.9e-12 75.1 54 59.3
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 2.5e-12 74.7 54 59.3
CAN.G1218.14 Capsicum annuum HOM05D003385 ORTHO05D003844 3.3e-12 74.3 52 65.4
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 3.3e-12 74.3 54 63.0
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 3.3e-12 74.3 54 57.4
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 3.3e-12 74.3 51 68.6
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 4.3e-12 73.9 54 64.8
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 4.3e-12 73.9 54 61.1
Prupe.5G072000 Prunus persica HOM05D003385 ORTHO05D003844 7.4e-12 73.2 54 59.3
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 7.4e-12 73.2 52 63.5
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.3e-11 72.4 54 57.4
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.3e-11 72.4 54 57.4
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 1.3e-11 72.4 54 57.4
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 1.3e-11 72.4 54 63.0
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 1.7e-11 72.0 52 61.5
CSS0015376 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.7e-11 72.0 53 58.5
DCAR_008484 Daucus carota HOM05D003385 ORTHO05D003844 1.7e-11 72.0 54 63.0
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 1.7e-11 72.0 52 59.6
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 1.7e-11 72.0 54 57.4
HanXRQChr13g0396331 Helianthus annuus HOM05D003385 ORTHO05D003844 2.2e-11 71.6 51 62.7
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 2.2e-11 71.6 52 63.5
Sc25g0000080 Simmondsia chinensis HOM05D003385 ORTHO05D003844 2.8e-11 71.2 54 61.1
RcHm_v2.0_Chr7g0202941 Rosa chinensis HOM05D003385 ORTHO05D003844 3.7e-11 70.9 54 59.3
HanXRQChr06g0164351 Helianthus annuus HOM05D003385 ORTHO05D003844 4.8e-11 70.5 51 64.7
Lj3g0012323 Lotus japonicus HOM05D003385 ORTHO05D003844 4.8e-11 70.5 54 59.3
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 4.8e-11 70.5 54 59.3
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 6.3e-11 70.1 53 52.8
Gohir.A11G079000 Gossypium hirsutum HOM05D003385 ORTHO05D003844 6.3e-11 70.1 50 62.0
Gorai.007G089200 Gossypium raimondii HOM05D003385 ORTHO05D003844 6.3e-11 70.1 50 62.0
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 6.3e-11 70.1 59 55.9
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 8.2e-11 69.7 54 57.4
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 8.2e-11 69.7 58 58.6
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 8.2e-11 69.7 54 59.3
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 1.1e-10 69.3 54 59.3
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 1.1e-10 69.3 54 59.3
Thecc.01G381400 Theobroma cacao HOM05D003385 ORTHO05D003844 1.1e-10 69.3 51 58.8
CSS0014285 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.4e-10 68.9 51 56.9
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.4e-10 68.9 52 57.7
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.4e-10 68.9 52 57.7
Ca_01010_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 1.4e-10 68.9 54 59.3
Gohir.D11G083700 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.4e-10 68.9 50 60.0
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 1.4e-10 68.9 54 55.6
Lalb_Chr00c36g0408871 Lupinus albus HOM05D003385 ORTHO05D003844 1.4e-10 68.9 52 63.5
Lalb_Chr24g0392851 Lupinus albus HOM05D003385 ORTHO05D003844 1.4e-10 68.9 52 63.5
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 1.4e-10 68.9 52 55.8
Zm00001eb094930 Zea mays HOM05D003385 ORTHO05D003844 1.4e-10 68.9 54 55.6
Os07g0239500 Oryza sativa ssp. japonica HOM05D003385 ORTHO05D003844 1.8e-10 68.6 54 55.6
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 2.4e-10 68.2 51 58.8
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 3.1e-10 67.8 54 55.6
FAN11G3453 Fragaria x ananassa HOM05D003385 ORTHO05D003844 3.1e-10 67.8 54 59.3
FAN21G1696 Fragaria x ananassa HOM05D003385 ORTHO05D003844 3.1e-10 67.8 54 59.3
Mapoly0083s0036 Marchantia polymorpha HOM05D003385 ORTHO05D003844 3.1e-10 67.8 57 56.1
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 3.1e-10 67.8 56 60.7
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 4.1e-10 67.4 56 55.4
Prupe.5G071800 Prunus persica HOM05D003385 ORTHO05D003844 4.1e-10 67.4 54 53.7
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 5.3e-10 67.0 50 60.0
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 5.3e-10 67.0 51 58.8
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 6.9e-10 66.6 51 52.9
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 6.9e-10 66.6 54 53.7
Medtr2g105230 Medicago truncatula HOM05D003385 ORTHO05D003844 6.9e-10 66.6 57 57.9
Nn6g33986 Nelumbo nucifera HOM05D003385 ORTHO05D003844 6.9e-10 66.6 52 59.6
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 6.9e-10 66.6 54 55.6
Phvul.010G162200 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 6.9e-10 66.6 51 58.8
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 9.1e-10 66.2 51 56.9
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 9.1e-10 66.2 56 53.6
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 9.1e-10 66.2 52 57.7
FAN25G0283 Fragaria x ananassa HOM05D003385 ORTHO05D003844 9.1e-10 66.2 54 57.4
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 9.1e-10 66.2 54 59.3
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 1.2e-09 65.9 48 62.5
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 1.5e-09 65.5 51 56.9
Glyma.11G031900 Glycine max HOM05D003385 ORTHO05D003844 1.5e-09 65.5 50 62.0
TAR375G0116 Trochodendron aralioides HOM05D003385 ORTHO05D003844 1.5e-09 65.5 53 54.7
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 2.0e-09 65.1 56 53.6
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 2.0e-09 65.1 52 55.8
SMO301G0071 Selaginella moellendorffii HOM05D003385 ORTHO05D003844 2.0e-09 65.1 54 51.9
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 2.6e-09 64.7 56 53.6
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 2.6e-09 64.7 52 53.8
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 2.6e-09 64.7 51 58.8
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 3.4e-09 64.3 57 50.9
HanXRQChr02g0049331 Helianthus annuus HOM05D003385 ORTHO05D003844 3.4e-09 64.3 51 58.8
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 3.4e-09 64.3 52 53.8
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 4.5e-09 63.9 57 50.9
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 4.5e-09 63.9 57 50.9
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 4.5e-09 63.9 57 50.9
DCAR_020191 Daucus carota HOM05D003385 ORTHO05D003844 4.5e-09 63.9 60 56.7
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 4.5e-09 63.9 52 55.8
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 4.5e-09 63.9 52 53.8
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 5.9e-09 63.5 51 52.9
GSVIVG01027642001 Vitis vinifera HOM05D003385 ORTHO05D003844 5.9e-09 63.5 58 53.4
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 7.7e-09 63.2 46 58.7
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 7.7e-09 63.2 46 58.7
Haze_07893 Corylus avellana HOM05D003385 ORTHO05D003844 7.7e-09 63.2 43 62.8
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 7.7e-09 63.2 52 51.9
Pp3c13_2320 Physcomitrium patens HOM05D003385 ORTHO05D003844 7.7e-09 63.2 50 60.0
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 1.3e-08 62.4 57 49.1
Ca_06643_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 1.3e-08 62.4 52 53.8
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 1.3e-08 62.4 50 50.0
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 1.7e-08 62.0 50 54.0
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 2.2e-08 61.6 51 51.0
Medtr5g012410 Medicago truncatula HOM05D003385 ORTHO05D003844 2.9e-08 61.2 58 53.4
Pp3c12_9350 Physcomitrium patens HOM05D003385 ORTHO05D003844 3.8e-08 60.8 54 55.6
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 5.0e-08 60.5 54 51.9
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 5.0e-08 60.5 57 47.4
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 5.0e-08 60.5 54 51.9
Migut.F01181 Erythranthe guttata HOM05D003385 ORTHO05D003844 5.0e-08 60.5 59 49.2
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 5.0e-08 60.5 51 47.1
VMungo0331G0997 Vigna mungo HOM05D004080 ORTHO05D003844 5.0e-08 60.5 54 46.3
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 6.5e-08 60.1 54 51.9
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 6.5e-08 60.1 54 51.9
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 6.5e-08 60.1 51 47.1
Rhsim06G0032500 Rhododendron simsii HOM05D003046 ORTHO05D003428 6.5e-08 60.1 46 54.3
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.1e-07 59.3 51 47.1
DCAR_024764 Daucus carota HOM05D003385 ORTHO05D003844 1.1e-07 59.3 53 54.7
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 1.1e-07 59.3 52 50.0
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 1.9e-07 58.5 54 50.0
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.9e-07 58.5 55 50.9
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 2.5e-07 58.2 52 50.0
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 2.5e-07 58.2 52 50.0
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 2.5e-07 58.2 49 55.1
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 3.2e-07 57.8 49 55.1
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 4.2e-07 57.4 52 50.0
Pp3c5_5420 Physcomitrium patens HOM05D003385 ORTHO05D003844 5.5e-07 57.0 54 42.6
Medtr4g007230 Medicago truncatula HOM05D003385 ORTHO05D003844 7.2e-07 56.6 54 50.0
Zm00001eb303930 Zea mays HOM05D003385 ORTHO05D003844 7.2e-07 56.6 47 51.1
CSS0007736 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 9.4e-07 56.2 45 53.3
TPR.G25901 Trifolium pratense HOM05D003385 ORTHO05D003844 9.4e-07 56.2 52 46.2
arahy.Tifrunner.gnm1.ann1.P9PDR5 Arachis hypogaea HOM05D001063 ORTHO05D000986 1.2e-06 55.8 42 54.8
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 1.2e-06 55.8 56 48.2
CARHR248220 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.2e-06 55.8 51 45.1
Carub.0006s3706 Capsella rubella HOM05D003385 ORTHO05D003844 1.6e-06 55.5 49 46.9
Cc02_g24330 Coffea canephora HOM05D003385 ORTHO05D003844 1.6e-06 55.5 52 42.3
Psat7g263040 Pisum sativum HOM05D003385 ORTHO05D003844 1.6e-06 55.5 52 48.1
Aqoxy5G03905 Aquilegia oxysepala HOM05D003385 ORTHO05D003844 2.1e-06 55.1 48 52.1
EL10Ac5g13053 Beta vulgaris HOM05D003385 ORTHO05D003844 2.7e-06 54.7 53 49.1
Migut.B01603 Erythranthe guttata HOM05D003385 ORTHO05D003844 3.6e-06 54.3 50 48.0
Medtr2g105240 Medicago truncatula HOM05D003385 ORTHO05D003844 4.7e-06 53.9 48 47.9


User provided reference genes

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