Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50358 Brassica carinata HOM05D020523 ORTHO05D000959 1.1e-54 216.5 112 100.0
C01p26280 Brassica napus HOM05D020523 ORTHO05D000959 5.3e-54 214.2 112 99.1
BolC1t02574H Brassica oleracea HOM05D020523 ORTHO05D000959 2.6e-53 211.8 112 98.2
A01p20970 Brassica napus HOM05D020523 ORTHO05D000959 1.7e-52 209.1 112 96.4
BraA01t02014Z Brassica rapa HOM05D020523 ORTHO05D000959 1.7e-52 209.1 112 96.4
BcaNung00188 Brassica carinata HOM05D000519 ORTHO05D000959 2.9e-36 155.2 114 79.8
C01p26260 Brassica napus HOM05D000519 ORTHO05D000959 1.3e-20 103.2 101 61.4
BcaNung00187 Brassica carinata HOM05D000519 ORTHO05D000959 2.2e-20 102.4 114 57.9
Sp7g15050 Schrenkiella parvula HOM05D000519 ORTHO05D000959 2.2e-20 102.4 98 63.3
AT4G16500 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 2.9e-20 102.1 117 56.4
Thhalv10026611m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 5.0e-20 101.3 98 60.2
BcaNung00185 Brassica carinata HOM05D000519 ORTHO05D000959 6.5e-20 100.9 114 57.9
BcaC07g37991 Brassica carinata HOM05D000519 ORTHO05D000959 7.2e-19 97.4 98 58.2
BolC8t48374H Brassica oleracea HOM05D000519 ORTHO05D000959 7.2e-19 97.4 98 58.2
A08p12510 Brassica napus HOM05D000519 ORTHO05D000959 1.6e-18 96.3 98 57.1
BraA08t33241Z Brassica rapa HOM05D000519 ORTHO05D000959 1.6e-18 96.3 98 57.1
A01p20960 Brassica napus HOM05D000519 ORTHO05D000959 8.0e-18 94.0 118 55.9
BraA01t02013Z Brassica rapa HOM05D000519 ORTHO05D000959 1.0e-17 93.6 117 55.6
AL7G38460 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 4.0e-17 91.7 100 56.0
Carub.0007s2500 Capsella rubella HOM05D000519 ORTHO05D000959 5.2e-17 91.3 101 54.5
CARHR222900 Cardamine hirsuta HOM05D000519 ORTHO05D000959 1.5e-16 89.7 98 57.1
A01p20920 Brassica napus HOM05D000519 ORTHO05D000959 4.4e-16 88.2 114 50.0
A01p20930 Brassica napus HOM05D000519 ORTHO05D000959 2.7e-13 79.0 71 60.6
BraA01t02011Z Brassica rapa HOM05D000519 ORTHO05D000959 2.7e-13 79.0 71 60.6
Aa31LG3G7150 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.0e-12 77.0 96 50.0
A01p20940 Brassica napus HOM05D000519 ORTHO05D000959 1.0e-12 77.0 70 60.0
A03p42900 Brassica napus HOM05D000519 ORTHO05D000959 1.0e-12 77.0 111 45.9
Aa31LG3G7160 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.7e-12 76.3 96 50.0
C01p26270 Brassica napus HOM05D000519 ORTHO05D000959 2.2e-12 75.9 83 55.4
BcaC06g33484 Brassica carinata HOM05D000519 ORTHO05D016725 5.5e-11 71.2 115 40.0
BcaC06g33485 Brassica carinata HOM05D000519 ORTHO05D016725 5.5e-11 71.2 115 40.0
C07p47950 Brassica napus HOM05D000519 ORTHO05D016725 5.5e-11 71.2 115 40.0
BolC7t45318H Brassica oleracea HOM05D000519 ORTHO05D016725 5.5e-11 71.2 115 40.0
Aa31LG9G7000 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.6e-10 69.7 114 42.1
A03p42880 Brassica napus HOM05D000519 ORTHO05D000959 2.7e-10 68.9 115 40.0
BraA03t13434Z Brassica rapa HOM05D000519 ORTHO05D000959 2.7e-10 68.9 115 40.0
Aa31LG2G12610 Aethionema arabicum HOM05D000519 ORTHO05D000959 3.6e-10 68.6 99 49.5
BcaB04g19211 Brassica carinata HOM05D000519 ORTHO05D000959 3.6e-10 68.6 116 42.2
BcaNung02871 Brassica carinata HOM05D000519 ORTHO05D016725 4.7e-10 68.2 115 39.1
Aa31LG2G12570 Aethionema arabicum HOM05D000519 ORTHO05D019510 6.1e-10 67.8 97 50.5
BcaB03g14656 Brassica carinata HOM05D000519 ORTHO05D000959 6.1e-10 67.8 116 44.0
A03p49900 Brassica napus HOM05D000519 ORTHO05D016725 6.1e-10 67.8 114 39.5
BraA03t14084Z Brassica rapa HOM05D000519 ORTHO05D016725 6.1e-10 67.8 114 39.5
Sp7g15060 Schrenkiella parvula HOM05D000519 ORTHO05D016725 1.4e-09 66.6 115 42.6
Aa31LG9G7070 Aethionema arabicum HOM05D000519 ORTHO05D000959 8.8e-09 63.9 104 42.3
Aa31LG3G7170 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.2e-08 63.5 66 51.5
Aa31LG7G5010 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.6e-08 62.4 89 50.6
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 7.5e-08 60.8 91 40.7
Lj3g0000523 Lotus japonicus HOM05D000519 ORTHO05D000959 1.3e-07 60.1 98 38.8
Ah.14g087560 Amaranthus hybridus HOM05D000519 ORTHO05D000959 1.7e-07 59.7 74 47.3
RcHm_v2.0_Chr2g0140821 Rosa chinensis HOM05D000519 ORTHO05D000959 1.7e-07 59.7 116 32.8
Aa31sc265G20 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.2e-07 59.3 105 37.1
A08p12530 Brassica napus HOM05D030867 ORTHO05D027735 2.2e-07 59.3 98 35.7
BolC8t48375H Brassica oleracea HOM05D030867 ORTHO05D027735 2.2e-07 59.3 98 35.7
BraA08t33242Z Brassica rapa HOM05D030867 ORTHO05D027735 2.2e-07 59.3 98 35.7
Aa31LG2G12580 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.8e-07 58.9 69 52.2
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.8e-07 58.9 104 34.6
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 3.7e-07 58.5 90 40.0
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 3.7e-07 58.5 90 40.0
THA.LOC104817839 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 3.7e-07 58.5 109 37.6
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 4.8e-07 58.2 77 41.6
QL04p088219 Quercus lobata HOM05D000519 ORTHO05D000959 8.3e-07 57.4 82 39.0
Aa31LG9G7030 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.1e-06 57.0 114 37.7
HanXRQChr04g0096491 Helianthus annuus HOM05D000519 ORTHO05D000959 1.4e-06 56.6 109 34.9
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 2.4e-06 55.8 98 39.8
ClCG09G014710 Citrullus lanatus HOM05D010035 ORTHO05D019011 3.1e-06 55.5 64 43.8
Rhsim13G0144600 Rhododendron simsii HOM05D000519 ORTHO05D000959 3.1e-06 55.5 103 37.9
RcHm_v2.0_Chr3g0452681 Rosa chinensis HOM05D000519 ORTHO05D000959 3.1e-06 55.5 99 36.4
Aqoxy1G02061 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 4.1e-06 55.1 110 37.3
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 4.1e-06 55.1 116 37.1
Aa31LG2G12590 Aethionema arabicum HOM05D000519 ORTHO05D000959 5.4e-06 54.7 87 44.8
Aqoxy1G04041 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 5.4e-06 54.7 116 33.6
DCAR_004907 Daucus carota HOM05D000519 ORTHO05D000959 5.4e-06 54.7 110 34.5
Cc04_g13850 Coffea canephora HOM05D020523 ORTHO05D000959 7.0e-06 54.3 79 36.7
Aa31LG2G12600 Aethionema arabicum HOM05D000519 ORTHO05D000959 9.1e-06 53.9 59 50.8
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 9.1e-06 53.9 93 36.6
FAN05G3419 Fragaria x ananassa HOM05D010898 ORTHO05D015117 9.1e-06 53.9 103 32.0
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 9.1e-06 53.9 96 36.5
QL04p088239 Quercus lobata HOM05D000519 ORTHO05D000959 9.1e-06 53.9 87 36.8
PGSC0003DMG400047215 Solanum tuberosum HOM05D000519 ORTHO05D000959 9.1e-06 53.9 94 38.3


User provided reference genes

Program Settings