Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 3.5e-55 218.0 107 100.0
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 3.5e-55 218.0 107 100.0
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 8.6e-54 213.4 107 98.1
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 8.6e-54 213.4 107 98.1
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 8.6e-54 213.4 107 98.1
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 1.2e-52 209.5 104 98.1
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 1.6e-52 209.1 107 95.3
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 6.2e-52 207.2 107 94.4
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 8.1e-52 206.8 106 94.3
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 1.8e-51 205.7 107 93.5
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 5.2e-51 204.1 107 93.5
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 2.0e-50 202.2 104 97.1
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 2.0e-50 202.2 104 97.1
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 2.0e-50 202.2 104 97.1
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 2.0e-50 202.2 104 97.1
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 3.4e-50 201.4 104 92.3
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 1.3e-49 199.5 105 95.2
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 8.3e-49 196.8 102 93.1
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 7.1e-48 193.7 102 92.2
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 7.1e-48 193.7 102 91.2
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 9.2e-48 193.4 102 90.2
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 9.2e-48 193.4 102 89.2
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.2e-47 193.0 102 89.2
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 2.1e-47 192.2 102 89.2
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 3.5e-47 191.4 102 88.2
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 4.6e-47 191.0 102 89.2
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 6.0e-47 190.7 103 90.3
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 1.0e-46 189.9 102 88.2
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 3.9e-46 188.0 102 88.2
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 5.1e-46 187.6 101 87.1
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 5.1e-46 187.6 101 87.1
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 5.1e-46 187.6 100 90.0
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 6.6e-46 187.2 100 90.0
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 8.6e-46 186.8 100 89.0
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 1.1e-45 186.4 100 88.0
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 1.9e-45 185.7 100 88.0
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 3.3e-45 184.9 101 88.1
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.3e-45 184.5 101 85.1
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 5.6e-45 184.1 100 85.0
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 5.6e-45 184.1 100 87.0
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 7.3e-45 183.7 101 89.1
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 7.3e-45 183.7 100 89.0
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 7.3e-45 183.7 101 87.1
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 7.3e-45 183.7 100 88.0
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 1.6e-44 182.6 100 86.0
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 1.6e-44 182.6 101 85.1
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 1.6e-44 182.6 101 85.1
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.6e-44 182.6 100 85.0
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 2.1e-44 182.2 101 86.1
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 85.0
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 85.0
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 2.8e-44 181.8 101 85.1
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 3.6e-44 181.4 101 87.1
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 3.6e-44 181.4 101 84.2
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 4.7e-44 181.0 100 86.0
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 6.2e-44 180.6 100 85.0
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 6.2e-44 180.6 100 85.0
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 6.2e-44 180.6 101 82.2
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 8.1e-44 180.3 101 84.2
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 85.0
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 85.0
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 85.0
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 83.0
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 84.0
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 1.1e-43 179.9 101 85.1
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 85.0
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 84.0
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 84.0
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 1.4e-43 179.5 126 73.0
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 1.4e-43 179.5 101 82.2
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 1.4e-43 179.5 99 86.9
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 85.0
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 1.8e-43 179.1 94 90.4
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 1.8e-43 179.1 96 87.5
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 2.4e-43 178.7 100 83.0
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.4e-43 178.7 100 84.0
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 3.1e-43 178.3 100 85.0
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 3.1e-43 178.3 101 82.2
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 3.1e-43 178.3 99 83.8
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 3.1e-43 178.3 100 84.0
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 4.0e-43 177.9 101 86.1
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 4.0e-43 177.9 100 83.0
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 4.0e-43 177.9 100 84.0
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 5.2e-43 177.6 94 90.4
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 5.2e-43 177.6 94 90.4
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 5.2e-43 177.6 100 83.0
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 6.8e-43 177.2 99 84.8
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 6.8e-43 177.2 100 83.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 6.8e-43 177.2 100 83.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 6.8e-43 177.2 100 83.0
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 8.9e-43 176.8 100 83.0
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 8.9e-43 176.8 100 84.0
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 8.9e-43 176.8 95 87.4
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 8.9e-43 176.8 101 83.2
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 82.0
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 83.0
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 1.2e-42 176.4 96 87.5
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 1.5e-42 176.0 100 81.0
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 3.4e-42 174.9 101 82.2
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 4.4e-42 174.5 100 82.0
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 4.4e-42 174.5 101 83.2
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 1.3e-41 172.9 96 85.4
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 1.3e-41 172.9 100 81.0
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 3.8e-41 171.4 94 85.1
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 3.8e-41 171.4 94 84.0
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 3.8e-41 171.4 100 81.0
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 6.4e-41 170.6 95 85.3
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 8.4e-41 170.2 95 83.2
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 2.4e-40 168.7 100 80.0
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 4.1e-40 167.9 94 84.0
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 3.5e-39 164.9 99 77.8
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 2.4e-35 152.1 104 73.1
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 2.6e-34 148.7 102 74.5
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.0e-30 136.7 100 70.0
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.6e-28 129.4 79 75.9
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 1.1e-24 116.7 93 59.1
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 5.4e-24 114.4 93 55.9
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 4.6e-23 111.3 91 57.1
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 4.3e-21 104.8 93 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 1.3e-20 103.2 92 53.3
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 1.6e-20 102.8 92 52.2
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 4.8e-20 101.3 60 80.0
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 1.1e-19 100.1 91 56.0
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 6.9e-19 97.4 59 76.3
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 8.4e-17 90.5 51 80.4
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 3.2e-16 88.6 52 76.9
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 1.6e-15 86.3 89 48.3
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 6.0e-15 84.3 48 81.2
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 2.3e-14 82.4 51 70.6
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 1.1e-13 80.1 94 48.9
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.3e-13 78.2 52 69.2
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 7.4e-13 77.4 55 67.3
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 6.5e-09 64.3 43 69.8


User provided reference genes

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