Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 4.0e-273 944.1 468 100.0
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 4.0e-273 944.1 468 100.0
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 5.1e-268 927.2 468 98.3
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 2.5e-267 924.9 468 97.9
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.3e-263 912.5 492 93.3
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.2e-263 911.8 468 95.9
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 5.7e-251 870.5 468 91.2
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.2e-247 858.6 468 89.3
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 8.8e-244 846.7 476 87.6
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.3e-242 842.8 476 87.2
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 9.4e-238 826.6 472 86.2
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.5e-235 819.3 477 84.9
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 3.6e-229 798.1 473 82.0
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.1e-206 723.4 480 73.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.8e-205 718.8 480 72.5
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.8e-204 716.1 480 72.7
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.6e-203 712.2 480 72.9
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 7.5e-203 710.7 479 73.1
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.1e-201 706.8 480 72.3
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 7.0e-201 704.1 480 72.3
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 7.8e-200 700.7 480 70.4
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.7e-199 699.5 481 70.5
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.0e-199 698.7 480 70.6
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 8.6e-199 697.2 480 71.2
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.1e-198 696.8 485 71.5
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.2e-197 693.3 482 69.9
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.6e-197 693.0 481 70.1
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.1e-197 692.6 474 71.5
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 2.8e-197 692.2 478 71.1
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 6.2e-197 691.0 479 69.5
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 6.2e-197 691.0 479 69.5
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 8.0e-197 690.6 480 70.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 2.3e-196 689.1 481 69.0
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.3e-196 689.1 480 69.4
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 3.1e-196 688.7 480 69.6
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.6e-195 685.6 484 69.4
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 4.4e-195 684.9 482 69.9
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 5.8e-195 684.5 473 70.4
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.7e-194 682.9 507 66.7
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.7e-194 682.9 486 69.8
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 2.2e-194 682.6 475 70.3
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.9e-194 681.4 492 68.9
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 6.4e-194 681.0 477 70.2
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 8.3e-194 680.6 481 69.0
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.4e-193 679.9 482 70.3
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.4e-193 679.1 479 69.9
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.2e-193 678.7 477 69.8
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.1e-193 678.3 481 68.0
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 5.4e-193 677.9 484 69.0
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 7.8e-192 674.1 483 67.7
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 7.8e-192 674.1 481 68.6
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 6.6e-191 671.0 480 67.7
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 8.6e-191 670.6 473 70.4
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.1e-190 670.2 481 68.4
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.9e-190 669.5 481 68.6
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 2.5e-190 669.1 481 68.0
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.3e-190 668.7 481 68.2
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 7.3e-190 667.5 477 68.1
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-189 666.8 484 68.2
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.2e-189 666.8 474 69.0
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-189 666.4 485 68.9
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.6e-189 666.4 481 68.8
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 2.1e-189 666.0 476 67.2
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.8e-189 665.6 480 67.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 4.7e-189 664.8 481 68.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 6.2e-189 664.5 480 67.7
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 8.1e-189 664.1 481 68.0
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.4e-188 663.3 486 67.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.4e-188 663.3 482 67.0
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.4e-188 663.3 481 68.2
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.8e-188 662.9 481 68.2
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 3.1e-188 662.1 474 68.4
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-188 661.8 496 66.5
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.0e-187 659.4 474 67.3
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 7.5e-187 657.5 475 67.6
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 9.9e-187 657.1 474 68.4
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 6.4e-186 654.4 474 66.9
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 6.4e-186 654.4 474 67.1
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.9e-185 652.9 474 67.5
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 9.2e-185 650.6 474 66.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.2e-184 650.2 474 67.9
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 6.0e-184 647.9 516 64.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 6.0e-184 647.9 474 66.7
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.8e-184 647.5 508 63.2
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.3e-183 646.7 494 64.8
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.6e-183 644.4 488 66.4
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 5.6e-182 641.3 474 67.7
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 9.5e-182 640.6 476 66.8
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.6e-181 639.8 567 58.4
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.6e-181 639.8 473 66.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.8e-181 639.0 472 65.5
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.6e-181 638.6 488 65.2
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 4.7e-181 638.3 428 72.2
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 7.6e-179 630.9 488 65.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 7.6e-179 630.9 471 65.2
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.3e-178 630.2 489 65.6
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 2.9e-178 629.0 482 64.1
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 6.4e-178 627.9 445 69.0
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 8.4e-178 627.5 470 65.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.1e-177 627.1 487 63.2
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 4.2e-177 625.2 458 68.6
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 5.1e-175 618.2 475 64.8
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.6e-175 617.8 416 70.0
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 3.6e-173 612.1 427 69.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 4.9e-170 601.7 512 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.1e-169 597.8 488 61.9
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 6.0e-168 594.7 428 67.5
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.5e-166 589.3 416 68.8
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.4e-164 583.6 473 62.8
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.8e-164 583.2 470 62.1
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.9e-159 565.5 487 58.1
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 7.4e-158 561.2 483 60.9
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.2e-155 553.9 475 58.3
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.4e-153 547.0 553 54.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 3.7e-149 532.3 412 65.3
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.0e-143 512.7 355 72.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.0e-138 495.4 414 61.6
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 5.1e-135 485.3 487 54.8
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.9e-129 466.8 480 51.5
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.1e-100 369.8 597 39.4
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 6.6e-98 362.1 518 43.1
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 7.2e-97 358.6 253 64.8
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.3e-90 337.8 249 67.5
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 4.0e-87 326.2 533 38.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.7e-82 310.8 211 75.4
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.4e-76 289.3 183 70.5
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.6e-75 286.2 210 63.8
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 5.4e-68 262.7 250 52.4
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 5.1e-66 256.1 381 43.3
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.4e-62 243.4 185 73.0
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.8e-61 240.0 183 61.2
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.4e-55 220.7 477 34.6
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.0e-54 217.6 251 46.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 9.9e-46 188.7 437 33.6
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 9.3e-44 182.2 172 54.7
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.8e-40 169.9 442 28.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.1e-40 169.1 368 33.2
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.8e-39 167.9 489 28.8
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.7e-32 143.7 212 42.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.2e-28 130.2 198 38.4
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-19 101.3 183 40.4
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.2e-16 91.3 132 41.7
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-14 84.7 66 65.2
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 5.9e-14 83.2 66 68.2
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 7.7e-14 82.8 66 68.2
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.7e-11 73.6 69 53.6
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 3.9e-10 70.5 68 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.7e-09 66.6 83 50.6
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-08 65.1 64 54.7


User provided reference genes

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