Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 4.9e-51 204.1 101 100.0
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 1.8e-29 132.5 88 80.7
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 1.8e-29 132.5 91 75.8
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 2.4e-29 132.1 88 78.4
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 2.4e-29 132.1 88 78.4
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 4.1e-29 131.3 88 76.1
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 4.1e-29 131.3 91 74.7
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 5.3e-29 131.0 88 77.3
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 5.3e-29 131.0 88 77.3
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 6.9e-29 130.6 91 73.6
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 6.9e-29 130.6 91 73.6
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 6.9e-29 130.6 91 73.6
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 6.1e-25 117.5 87 65.5
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 7.9e-25 117.1 88 67.0
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 1.0e-24 116.7 91 61.5
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 1.8e-24 115.9 89 61.8
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 1.8e-24 115.9 89 61.8
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 1.8e-24 115.9 89 61.8
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 5.1e-24 114.4 88 63.6
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 6.7e-24 114.0 88 63.6
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 8.8e-24 113.6 88 65.9
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 8.8e-24 113.6 91 62.6
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 1.5e-23 112.8 88 63.6
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 2.0e-23 112.5 88 63.6
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 2.0e-23 112.5 88 64.8
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 2.5e-23 112.1 110 61.8
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 2.5e-23 112.1 87 64.4
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 3.3e-23 111.7 87 65.5
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 3.3e-23 111.7 88 64.8
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 4.3e-23 111.3 87 63.2
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 5.7e-23 110.9 88 63.6
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 5.7e-23 110.9 92 58.7
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 7.4e-23 110.5 87 64.4
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 9.7e-23 110.2 92 56.5
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 1.3e-22 109.8 86 61.6
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 1.3e-22 109.8 87 62.1
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 1.3e-22 109.8 87 63.2
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 1.3e-22 109.8 91 60.4
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 1.7e-22 109.4 87 60.9
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 1.7e-22 109.4 92 58.7
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 1.7e-22 109.4 87 58.6
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 2.2e-22 109.0 88 58.0
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 2.2e-22 109.0 88 60.2
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 2.2e-22 109.0 88 59.1
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 2.8e-22 108.6 87 63.2
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 2.8e-22 108.6 87 63.2
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 3.7e-22 108.2 87 62.1
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 3.7e-22 108.2 91 57.1
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 3.7e-22 108.2 88 59.1
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 3.7e-22 108.2 87 57.5
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 3.7e-22 108.2 88 59.1
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 3.7e-22 108.2 91 59.3
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 4.8e-22 107.8 88 60.2
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 6.3e-22 107.5 87 58.6
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 8.2e-22 107.1 92 58.7
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 1.1e-21 106.7 87 60.9
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 1.1e-21 106.7 91 58.2
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.8e-21 105.9 84 61.9
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 1.8e-21 105.9 88 56.8
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 2.4e-21 105.5 91 57.1
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 2.4e-21 105.5 88 58.0
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 3.1e-21 105.1 91 58.2
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 3.1e-21 105.1 85 60.0
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 4.1e-21 104.8 88 60.2
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 6.9e-21 104.0 85 58.8
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 6.9e-21 104.0 85 58.8
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 9.1e-21 103.6 88 56.8
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 9.1e-21 103.6 88 56.8
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 9.1e-21 103.6 87 59.8
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 9.1e-21 103.6 87 59.8
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 9.1e-21 103.6 91 58.2
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 9.1e-21 103.6 91 58.2
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 9.1e-21 103.6 88 58.0
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 9.1e-21 103.6 88 55.7
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 1.2e-20 103.2 88 58.0
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 2.0e-20 102.4 91 64.8
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 2.0e-20 102.4 87 55.2
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 2.0e-20 102.4 87 57.5
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 2.6e-20 102.1 88 56.8
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 2.6e-20 102.1 91 56.0
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 5.9e-20 100.9 88 53.4
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 2.9e-19 98.6 87 56.3
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 3.8e-19 98.2 88 53.4
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 6.5e-19 97.4 87 54.0
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 6.5e-19 97.4 73 67.1
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 6.5e-19 97.4 88 51.1
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 8.5e-19 97.1 87 52.9
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 7.2e-18 94.0 87 47.1
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 1.6e-17 92.8 86 54.7
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 3.6e-17 91.7 79 58.2
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 3.6e-17 91.7 75 58.7
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 1.8e-16 89.4 87 48.3
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.0e-15 85.9 78 56.4
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 3.3e-15 85.1 74 56.8
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 9.7e-15 83.6 83 49.4
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 1.3e-14 83.2 83 47.0
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 2.2e-14 82.4 57 73.7
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 8.2e-14 80.5 84 41.7
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 4.1e-13 78.2 85 43.5
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 2.9e-11 72.0 63 55.6
A01p21190 Brassica napus HOM05D007365 ORTHO05D009309 1.5e-10 69.7 46 82.6
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 3.2e-10 68.6 77 42.9
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-10 67.0 85 40.0
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 2.8e-06 55.5 46 56.5


User provided reference genes

Program Settings