Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50322 Brassica carinata HOM05D004788 ORTHO05D017669 3.1e-59 231.5 108 100.0
Sp4g11690 Schrenkiella parvula HOM05D004788 ORTHO05D006465 7.9e-23 110.5 143 44.8
BcaB02g10208 Brassica carinata HOM05D004788 ORTHO05D006465 1.0e-22 110.2 144 45.1
BcaC02g11019 Brassica carinata HOM05D004788 ORTHO05D006465 1.1e-21 106.7 144 46.5
BolC4t27333H Brassica oleracea HOM05D004788 ORTHO05D006465 9.7e-21 103.6 145 43.4
BraA04t17760Z Brassica rapa HOM05D004788 ORTHO05D006465 1.7e-20 102.8 143 44.8
Thhalv10016200m.g Eutrema salsugineum HOM05D004788 ORTHO05D006465 1.7e-20 102.8 145 42.8
AT2G28880 Arabidopsis thaliana HOM05D004788 ORTHO05D006465 2.2e-20 102.4 140 42.9
C04p22120 Brassica napus HOM05D004788 ORTHO05D006465 2.8e-20 102.1 145 46.2
BolC4t23734H Brassica oleracea HOM05D004788 ORTHO05D006465 2.8e-20 102.1 145 46.2
BcaC02g08128 Brassica carinata HOM05D004788 ORTHO05D006465 6.3e-20 100.9 145 43.4
C04p58070 Brassica napus HOM05D004788 ORTHO05D006465 6.3e-20 100.9 145 43.4
BcaB06g28261 Brassica carinata HOM05D004788 ORTHO05D006465 1.1e-19 100.1 149 40.3
AL4G23410 Arabidopsis lyrata HOM05D004788 ORTHO05D006465 1.8e-19 99.4 140 42.1
C05p55670 Brassica napus HOM05D004788 ORTHO05D017669 1.8e-19 99.4 53 84.9
Carub.0004s0987 Capsella rubella HOM05D004788 ORTHO05D006465 2.6e-18 95.5 140 42.1
BolC8t47938H Brassica oleracea HOM05D004788 ORTHO05D017669 3.4e-18 95.1 52 84.6
BolC9t58010H Brassica oleracea HOM05D004788 ORTHO05D017669 1.7e-17 92.8 52 82.7
A04p21930 Brassica napus HOM05D004788 ORTHO05D006465 3.8e-17 91.7 46 87.0
A07p19340 Brassica napus HOM05D004788 ORTHO05D006465 3.8e-17 91.7 46 87.0
TAR626G1809 Trochodendron aralioides HOM05D004788 ORTHO05D006465 1.4e-16 89.7 46 84.8
CiPaw.02G174400 Carya illinoinensis HOM05D004788 ORTHO05D006465 1.9e-16 89.4 49 81.6
DCAR_015314 Daucus carota HOM05D004788 ORTHO05D006465 1.9e-16 89.4 48 79.2
C09p51520 Brassica napus HOM05D004788 ORTHO05D017669 2.5e-16 89.0 48 85.4
Nn8g40780 Nelumbo nucifera HOM05D004788 ORTHO05D006465 3.2e-16 88.6 46 82.6
GSVIVG01016291001 Vitis vinifera HOM05D004788 ORTHO05D006465 3.2e-16 88.6 49 79.6
Aa31LG5G7350 Aethionema arabicum HOM05D004788 ORTHO05D006465 4.2e-16 88.2 47 85.1
CAN.G4.2 Capsicum annuum HOM05D004788 ORTHO05D006465 5.5e-16 87.8 46 84.8
MBI13_g34045_MAGBIO Magnolia biondii HOM05D004788 ORTHO05D006465 5.5e-16 87.8 46 80.4
ATR0626G067 Amborella trichopoda HOM05D004788 ORTHO05D006465 7.2e-16 87.4 46 78.3
Migut.F01772 Erythranthe guttata HOM05D004788 ORTHO05D006465 7.2e-16 87.4 49 73.5
SalBow5G2521 Salvia bowleyana HOM05D004788 ORTHO05D006465 7.2e-16 87.4 49 73.5
SGA_v2.0_scaffold341G49365 Striga asiatica HOM05D004788 ORTHO05D006465 7.2e-16 87.4 46 80.4
Aqoxy7G02809 Aquilegia oxysepala HOM05D004788 ORTHO05D006465 9.4e-16 87.0 46 76.1
Manes.07G101300 Manihot esculenta HOM05D004788 ORTHO05D006465 9.4e-16 87.0 49 75.5
Atru.chr12.738 Acer truncatum HOM05D004788 ORTHO05D030769 1.2e-15 86.7 46 82.6
CSS0002233 Camellia sinensis var. sinensis HOM05D004788 ORTHO05D006465 1.2e-15 86.7 46 82.6
CSS0028648 Camellia sinensis var. sinensis HOM05D004788 ORTHO05D006465 1.2e-15 86.7 46 82.6
Sabra10G0171400 Salix brachista HOM05D004788 ORTHO05D006465 1.2e-15 86.7 60 66.7
PSO063G3786 Papaver somniferum HOM05D004788 ORTHO05D006465 1.6e-15 86.3 46 78.3
PSO170G4427 Papaver somniferum HOM05D004788 ORTHO05D006465 1.6e-15 86.3 46 78.3
Lj1C915G0 Lonicera japonica HOM05D004788 ORTHO05D006465 2.1e-15 85.9 46 80.4
Potri.010G221500 Populus trichocarpa HOM05D004788 ORTHO05D006465 2.1e-15 85.9 49 77.6
TPR.G1941 Trifolium pratense HOM05D004788 ORTHO05D006465 2.1e-15 85.9 46 78.3
QL08p056120 Quercus lobata HOM05D004788 ORTHO05D006465 2.7e-15 85.5 114 44.7
unitig_60.g25702 Utricularia gibba HOM05D004788 ORTHO05D006465 2.7e-15 85.5 49 73.5
Lalb_Chr02g0142131 Lupinus albus HOM05D004788 ORTHO05D006465 3.6e-15 85.1 48 77.1
Solyc04g049360.3 Solanum lycopersicum HOM05D004788 ORTHO05D006465 3.6e-15 85.1 46 82.6
Sopen04g019320 Solanum pennellii HOM05D004788 ORTHO05D006465 3.6e-15 85.1 46 82.6
ECA232G0614 Erigeron canadensis HOM05D004788 ORTHO05D006465 4.7e-15 84.7 49 79.6
MD01G1109300 Malus domestica HOM05D004788 ORTHO05D006465 4.7e-15 84.7 46 80.4
PGR142G2437 Punica granatum HOM05D004788 ORTHO05D006465 4.7e-15 84.7 46 82.6
SEGI_34163 Sequoiadendron giganteum HOM05D004788 ORTHO05D006465 4.7e-15 84.7 49 73.5
Actinidia16628 Actinidia chinensis HOM05D004788 ORTHO05D006465 6.1e-15 84.3 84 53.6
Ca_29597_v3 Cicer arietinum L. HOM05D004788 ORTHO05D006465 6.1e-15 84.3 46 76.1
Hma1.2p1_0030F.1_g018320 Hydrangea macrophylla HOM05D004788 ORTHO05D006465 6.1e-15 84.3 46 80.4
Medtr1g095360 Medicago truncatula HOM05D004788 ORTHO05D006465 6.1e-15 84.3 46 80.4
Peaxi162Scf00747g00211 Petunia axillaris HOM05D004788 ORTHO05D006465 6.1e-15 84.3 46 82.6
Psat6g184480 Pisum sativum HOM05D004788 ORTHO05D006465 6.1e-15 84.3 46 78.3
CDE05G0857 Ceratophyllum demersum HOM05D004788 ORTHO05D006465 1.0e-14 83.6 46 73.9
MELO3C012434.2 Cucumis melo HOM05D004788 ORTHO05D006465 1.0e-14 83.6 49 75.5
CsaV3_5G036360 Cucumis sativus L. HOM05D004788 ORTHO05D006465 1.0e-14 83.6 49 75.5
TWI38G1549 Tripterygium wilfordii HOM05D004788 ORTHO05D006465 1.0e-14 83.6 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.18 Anthoceros agrestis HOM05D004788 ORTHO05D006465 1.4e-14 83.2 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2427 Anthoceros agrestis HOM05D004788 ORTHO05D006465 1.4e-14 83.2 46 78.3
arahy.Tifrunner.gnm1.ann1.6SV6NI Arachis hypogaea HOM05D004788 ORTHO05D006465 1.4e-14 83.2 46 73.9
arahy.Tifrunner.gnm1.ann1.CYD8BJ Arachis hypogaea HOM05D004788 ORTHO05D006465 1.4e-14 83.2 46 73.9
arahy.Tifrunner.gnm1.ann1.L4RTFU Arachis hypogaea HOM05D004788 ORTHO05D006465 1.4e-14 83.2 46 73.9
arahy.Tifrunner.gnm1.ann1.M3N3P9 Arachis hypogaea HOM05D004788 ORTHO05D006465 1.4e-14 83.2 46 73.9
Ciclev10030655m.g Citrus clementina HOM05D004788 ORTHO05D006465 1.4e-14 83.2 46 76.1
Ah.12g052940 Amaranthus hybridus HOM05D004788 ORTHO05D006465 1.8e-14 82.8 49 69.4
AUR62019882 Chenopodium quinoa HOM05D004788 ORTHO05D006465 1.8e-14 82.8 49 69.4
ClCG05G020950 Citrullus lanatus HOM05D004788 ORTHO05D006465 1.8e-14 82.8 49 75.5
MD07G1175300 Malus domestica HOM05D004788 ORTHO05D006465 1.8e-14 82.8 46 80.4
CANSAT25G2619 Cannabis sativa HOM05D004788 ORTHO05D006465 2.3e-14 82.4 49 75.5
Glyma.10G211600 Glycine max HOM05D004788 ORTHO05D006465 2.3e-14 82.4 46 78.3
Mapoly0009s0140 Marchantia polymorpha HOM05D004788 ORTHO05D006465 2.3e-14 82.4 49 73.5
Cc09_g02020 Coffea canephora HOM05D004788 ORTHO05D006465 3.0e-14 82.0 49 75.5
Glyma.20G179400 Glycine max HOM05D004788 ORTHO05D006465 3.0e-14 82.0 46 76.1
HanXRQChr08g0208591 Helianthus annuus HOM05D004788 ORTHO05D006465 3.0e-14 82.0 46 78.3
Phvul.007G094100 Phaseolus vulgaris HOM05D004788 ORTHO05D006465 3.0e-14 82.0 46 76.1
Sed0008505 Sechium edule HOM05D004788 ORTHO05D006465 3.0e-14 82.0 49 75.5
VMungo0720G1279 Vigna mungo HOM05D004788 ORTHO05D006465 3.0e-14 82.0 46 76.1
COL.COLO4_23692 Corchorus olitorius HOM05D004788 ORTHO05D006465 3.9e-14 81.6 145 35.2
Lsat_1_v5_gn_4_181581 Lactuca sativa HOM05D004788 ORTHO05D006465 3.9e-14 81.6 46 80.4
Lj5g0009066 Lotus japonicus HOM05D004788 ORTHO05D006465 5.2e-14 81.3 46 73.9
Oeu043947.4 Olea europaea HOM05D004788 ORTHO05D006465 5.2e-14 81.3 46 80.4
Ca_10574_v3 Cicer arietinum L. HOM05D004788 ORTHO05D006465 6.7e-14 80.9 44 77.3
FAN10G0780 Fragaria x ananassa HOM05D004788 ORTHO05D006465 8.8e-14 80.5 113 41.6
GSVIVG01016290001 Vitis vinifera HOM05D004788 ORTHO05D006465 8.8e-14 80.5 46 71.7
Rhsim09G0110900 Rhododendron simsii HOM05D004788 ORTHO05D006465 1.1e-13 80.1 46 78.3
Thecc.10G072500 Theobroma cacao HOM05D004788 ORTHO05D006465 1.1e-13 80.1 46 71.7
Duzib128G1556 Durio zibethinus HOM05D004788 ORTHO05D006465 2.0e-13 79.3 46 71.7
FvH4_7g19690 Fragaria vesca HOM05D004788 ORTHO05D006465 2.0e-13 79.3 46 73.9
Prupe.2G214500 Prunus persica HOM05D004788 ORTHO05D006465 2.0e-13 79.3 46 76.1
RcHm_v2.0_Chr1g0363521 Rosa chinensis HOM05D004788 ORTHO05D006465 2.0e-13 79.3 46 73.9
Gorai.011G240300 Gossypium raimondii HOM05D004788 ORTHO05D006465 2.6e-13 79.0 46 71.7
Gohir.D10G214700 Gossypium hirsutum HOM05D004788 ORTHO05D006465 3.3e-13 78.6 46 69.6
FAN01G2387 Fragaria x ananassa HOM05D004788 ORTHO05D006465 7.4e-13 77.4 45 73.3
FAN03G1313 Fragaria x ananassa HOM05D004788 ORTHO05D006465 7.4e-13 77.4 45 73.3
SMO356G0457 Selaginella moellendorffii HOM05D004788 ORTHO05D006465 9.7e-13 77.0 53 64.2
Dinv11782 Davidia involucrata HOM05D004788 ORTHO05D006465 1.7e-12 76.3 40 82.5
Gohir.A10G206600 Gossypium hirsutum HOM05D004788 ORTHO05D006465 1.7e-12 76.3 46 69.6
Pp3c26_2070 Physcomitrium patens HOM05D004788 ORTHO05D006465 1.7e-12 76.3 46 76.1
Hma1.2p1_0030F.1_g018330 Hydrangea macrophylla HOM05D004788 ORTHO05D006465 2.2e-12 75.9 40 82.5
HPP92_010286 Vanilla planifolia HOM05D004788 ORTHO05D006465 2.2e-12 75.9 46 67.4
CBR_g2786 Chara braunii HOM05D004788 ORTHO05D006465 2.8e-12 75.5 83 48.2
Cpa.g.sc53.70 Carica papaya HOM05D004788 ORTHO05D006465 3.7e-12 75.1 46 73.9
FAN10G0980 Fragaria x ananassa HOM05D004788 ORTHO05D006465 6.3e-12 74.3 45 71.1
FAN06G3031 Fragaria x ananassa HOM05D004788 ORTHO05D006465 7.0e-11 70.9 40 75.0
C01p26660 Brassica napus HOM05D004788 ORTHO05D030769 1.3e-09 66.6 28 100.0
BolC8t47937H Brassica oleracea HOM05D004788 ORTHO05D030769 6.5e-09 64.3 28 96.4
Cre03.g181400 Chlamydomonas reinhardtii HOM05D004788 ORTHO05D006465 8.5e-09 63.9 46 60.9
PRCOL_00000505 Prasinoderma coloniale HOM05D004788 ORTHO05D006465 1.6e-07 59.7 45 60.0
MCO09G690 Micromonas commoda HOM05D004788 ORTHO05D006465 3.6e-07 58.5 48 56.2


User provided reference genes

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