Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 3.6e-287 991.1 579 100.0
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 5.7e-136 488.8 298 98.0
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.5e-123 447.6 298 89.6
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 2.1e-122 443.7 298 88.9
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 2.1e-122 443.7 298 89.3
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 5.2e-121 439.1 298 87.6
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 3.4e-120 436.4 297 87.5
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 1.0e-116 424.9 298 88.6
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 1.0e-116 424.9 298 88.6
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 2.6e-112 410.2 296 85.8
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 6.0e-109 399.1 290 82.8
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 7.8e-109 398.7 293 81.6
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 2.1e-106 390.6 297 81.8
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 2.1e-90 337.4 299 71.9
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 2.9e-87 327.0 304 69.7
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.9e-86 324.3 306 66.0
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 1.9e-86 324.3 304 67.8
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 7.1e-86 322.4 288 73.3
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 9.3e-86 322.0 297 67.0
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 1.2e-85 321.6 299 69.2
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 1.2e-85 321.6 301 69.8
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 1.6e-85 321.2 285 70.5
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 2.1e-85 320.9 291 71.1
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 2.7e-85 320.5 324 66.4
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 3.5e-85 320.1 324 66.4
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 4.6e-85 319.7 297 68.7
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 6.0e-85 319.3 324 66.4
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 6.0e-85 319.3 288 63.5
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.3e-84 318.2 278 71.6
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 1.8e-84 317.8 280 69.3
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 2.3e-84 317.4 299 67.9
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 8.7e-84 315.5 297 67.0
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 1.1e-83 315.1 286 68.9
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 2.5e-83 313.9 306 69.0
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 3.3e-83 313.5 300 65.7
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 4.3e-83 313.2 320 64.1
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 5.6e-83 312.8 294 67.3
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 8.1e-82 308.9 298 64.1
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 1.1e-81 308.5 300 61.7
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 4.0e-81 306.6 299 66.6
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 4.0e-81 306.6 285 67.7
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 5.3e-81 306.2 287 67.6
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 1.5e-80 304.7 316 59.5
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 5.8e-80 302.8 300 67.7
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 6.5e-79 299.3 294 68.0
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 1.1e-78 298.5 295 68.1
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 1.4e-78 298.1 290 65.2
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 5.5e-78 296.2 281 71.2
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 1.2e-77 295.0 298 64.1
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.6e-77 293.1 285 65.6
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 4.6e-77 293.1 293 65.9
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.3e-76 291.6 298 63.8
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.8e-76 291.2 282 67.4
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 3.9e-76 290.0 285 65.6
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 6.7e-76 289.3 325 59.7
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 6.7e-76 289.3 290 66.2
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.5e-75 288.1 298 61.1
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 1.9e-75 287.7 295 58.3
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 2.5e-75 287.3 286 65.4
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 2.5e-75 287.3 380 48.9
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 2.5e-75 287.3 287 65.2
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 2.5e-75 287.3 288 65.3
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 4.3e-75 286.6 303 56.4
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 2.8e-74 283.9 286 65.0
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 3.7e-74 283.5 286 65.0
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 4.8e-74 283.1 255 69.0
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 8.2e-74 282.3 293 66.2
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 1.8e-73 281.2 326 54.0
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 1.8e-73 281.2 328 59.5
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 9.0e-73 278.9 293 63.1
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 4.5e-72 276.6 303 63.0
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 5.9e-72 276.2 296 63.2
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 1.7e-71 274.6 276 66.3
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 2.2e-71 274.2 291 63.2
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 2.2e-71 274.2 291 63.2
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 9.3e-70 268.9 298 56.7
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 1.2e-69 268.5 302 62.9
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 7.9e-69 265.8 303 58.7
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 1.0e-68 265.4 286 59.8
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.3e-68 265.0 291 61.5
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 1.8e-68 264.6 319 47.6
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 3.0e-68 263.8 292 61.0
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 6.7e-68 262.7 285 61.8
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 1.1e-67 261.9 285 61.1
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 1.6e-66 258.1 303 51.8
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 2.8e-66 257.3 277 62.1
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 4.8e-66 256.5 291 60.8
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 4.8e-66 256.5 285 61.4
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 6.3e-66 256.1 290 61.7
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 8.2e-66 255.8 142 88.7
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 1.8e-65 254.6 290 61.4
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 2.4e-65 254.2 290 61.7
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 2.2e-58 231.1 280 56.1
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 4.8e-58 229.9 273 58.6
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 2.0e-56 224.6 294 53.7
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 3.4e-56 223.8 176 65.3
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 9.4e-54 215.7 300 56.0
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 1.2e-53 215.3 275 55.3
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 6.1e-53 213.0 254 60.2
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 6.3e-50 203.0 301 40.5
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 5.9e-48 196.4 143 67.1
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 5.5e-46 189.9 142 63.4
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 2.6e-43 181.0 229 45.4
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.3e-43 180.6 169 53.8
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 5.7e-43 179.9 130 63.8
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 6.3e-42 176.4 187 48.7
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 8.2e-42 176.0 133 60.9
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.0e-40 171.4 191 47.6
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 3.2e-38 164.1 132 59.1
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.2e-38 164.1 191 46.1
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 7.2e-38 162.9 139 57.6
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 1.2e-35 155.6 155 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 3.7e-34 150.6 213 57.7
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 7.7e-32 142.9 131 53.4
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 3.6e-29 134.0 101 63.4
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 1.7e-26 125.2 278 41.7
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 6.3e-26 123.2 97 60.8
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 1.2e-24 119.0 251 29.5
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 1.0e-23 115.9 62 91.9
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.8e-23 114.0 74 68.9
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 1.5e-22 112.1 76 67.1
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 3.6e-21 107.5 69 73.9
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 6.8e-20 103.2 253 45.5
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 4.6e-16 90.5 88 51.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.0e-15 87.8 257 31.9
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 5.0e-15 87.0 138 37.0
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 7.5e-11 73.2 49 65.3
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 9.2e-09 66.2 54 59.3
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 6.6e-07 60.1 125 34.4
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 4.3e-06 57.4 85 44.7
Rhsim05G0171500 Rhododendron simsii HOM05D005795 ORTHO05D007200 7.3e-06 56.6 45 60.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 9.5e-06 56.2 57 54.4
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 9.5e-06 56.2 148 29.1


User provided reference genes

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