Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50217 Brassica carinata HOM05D000848 ORTHO05D014957 8.3e-185 650.2 324 100.0
C01p27780 Brassica napus HOM05D000848 ORTHO05D014957 2.8e-95 352.8 223 83.0
C06p06600 Brassica napus HOM05D000848 ORTHO05D014957 1.1e-67 261.2 160 85.0
BolC6t35773H Brassica oleracea HOM05D000848 ORTHO05D014957 1.1e-67 261.2 160 85.0
A01p22250 Brassica napus HOM05D000848 ORTHO05D014957 1.9e-67 260.4 159 85.5
BraA01t02138Z Brassica rapa HOM05D000848 ORTHO05D014957 1.9e-67 260.4 159 85.5
BcaC07g37825 Brassica carinata HOM05D000848 ORTHO05D014957 4.7e-63 245.7 134 92.5
BcaC03g15817 Brassica carinata HOM05D000848 ORTHO05D014957 4.0e-62 242.7 134 91.8
BcaC08g43312 Brassica carinata HOM05D000848 ORTHO05D014957 5.2e-62 242.3 134 91.0
C02p35620 Brassica napus HOM05D000848 ORTHO05D014957 2.6e-61 240.0 134 91.8
BolC1t02710H Brassica oleracea HOM05D000848 ORTHO05D014957 2.1e-58 230.3 117 97.4
BcaC03g15818 Brassica carinata HOM05D000848 ORTHO05D014957 2.7e-50 203.4 111 91.9
BcaB03g13249 Brassica carinata HOM05D008189 ORTHO05D012600 3.5e-50 203.0 127 82.7
C01p15420 Brassica napus HOM05D000848 ORTHO05D003342 4.6e-42 176.0 118 77.1
BolC1t01496H Brassica oleracea HOM05D000848 ORTHO05D003342 4.6e-42 176.0 118 77.1
BolC2t07668H Brassica oleracea HOM05D000848 ORTHO05D003342 1.1e-40 171.4 116 76.7
BolC2t10357H Brassica oleracea HOM05D008189 ORTHO05D003342 1.3e-25 121.3 82 70.7
C04p18710 Brassica napus HOM05D000848 ORTHO05D003342 3.9e-25 119.8 82 70.7
BolC1t01664H Brassica oleracea HOM05D008189 ORTHO05D003342 1.9e-24 117.5 82 70.7
A03p29750 Brassica napus HOM05D000848 ORTHO05D003342 9.7e-24 115.2 62 82.3
Thhalv10026798m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 6.3e-23 112.5 81 67.9
C04p18840 Brassica napus HOM05D000848 ORTHO05D003342 8.2e-23 112.1 64 79.7
Thhalv10029211m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 1.2e-21 108.2 63 76.2
Thhalv10029505m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 1.3e-20 104.8 67 71.6
Thhalv10019607m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 1.1e-19 101.7 86 60.5
Thhalv10019699m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 1.1e-19 101.7 69 68.1
Thhalv10006382m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 2.5e-19 100.5 69 68.1
A04p17460 Brassica napus HOM05D000848 ORTHO05D003342 9.4e-19 98.6 64 68.8
BraA04t17369Z Brassica rapa HOM05D000848 ORTHO05D016609 9.4e-19 98.6 64 68.8
Thhalv10026463m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 1.6e-18 97.8 69 65.2
Thhalv10005348m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 2.7e-18 97.1 117 46.2
AL5G27290 Arabidopsis lyrata HOM05D008189 ORTHO05D016609 3.0e-17 93.6 126 45.2
Thhalv10024110m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 6.7e-17 92.4 120 46.7
BcaC01g06423 Brassica carinata HOM05D000848 ORTHO05D020139 1.3e-15 88.2 90 46.7
A02p32130 Brassica napus HOM05D000848 ORTHO05D020100 4.8e-15 86.3 90 46.7
A06p43830 Brassica napus HOM05D000848 ORTHO05D003342 4.8e-15 86.3 90 46.7
Carub.0002s1565 Capsella rubella HOM05D000848 ORTHO05D003342 8.2e-15 85.5 91 50.5
AT2G07760 Arabidopsis thaliana HOM05D000848 ORTHO05D003342 1.4e-14 84.7 77 54.5
A08p18660 Brassica napus HOM05D008189 ORTHO05D020139 1.4e-14 84.7 78 52.6
BraA03t10758Z Brassica rapa HOM05D008189 ORTHO05D020139 1.4e-14 84.7 78 52.6
A09p10540 Brassica napus HOM05D000848 ORTHO05D003342 1.8e-14 84.3 65 58.5
Carub.0001s1624 Capsella rubella HOM05D000848 ORTHO05D003342 2.4e-14 84.0 91 50.5
Carub.0007s3131 Capsella rubella HOM05D000848 ORTHO05D003342 3.1e-14 83.6 114 46.5
CARHR183910 Cardamine hirsuta HOM05D000848 ORTHO05D000007 4.1e-14 83.2 55 63.6
C01p38710 Brassica napus HOM05D000848 ORTHO05D003342 5.3e-14 82.8 83 45.8
C07p58790 Brassica napus HOM05D000848 ORTHO05D003342 5.3e-14 82.8 95 45.3
C09p53680 Brassica napus HOM05D013019 ORTHO05D003342 9.1e-14 82.0 91 44.0
BolC9t58243H Brassica oleracea HOM05D013019 ORTHO05D003342 9.1e-14 82.0 91 44.0
BraA05t20699Z Brassica rapa HOM05D013019 ORTHO05D003342 9.1e-14 82.0 91 45.1
Carub.0002s0549 Capsella rubella HOM05D000848 ORTHO05D003342 1.2e-13 81.6 105 46.7
C01p33860 Brassica napus HOM05D000848 ORTHO05D003342 1.5e-13 81.3 83 44.6
BolC2t11262H Brassica oleracea HOM05D000848 ORTHO05D003342 2.6e-13 80.5 94 47.9
BcaC06g30921 Brassica carinata HOM05D000848 ORTHO05D018560 4.5e-13 79.7 54 63.0
BolC3t18271H Brassica oleracea HOM05D000848 ORTHO05D022013 4.5e-13 79.7 54 64.8
BcaB06g25358 Brassica carinata HOM05D000848 ORTHO05D003342 5.9e-13 79.3 118 37.3
BcaC05g30229 Brassica carinata HOM05D000848 ORTHO05D003342 5.9e-13 79.3 118 37.3
C02p51770 Brassica napus HOM05D000848 ORTHO05D003342 5.9e-13 79.3 107 43.0
BcaC09g49472 Brassica carinata HOM05D000848 ORTHO05D003342 7.7e-13 79.0 54 63.0
C08p48880 Brassica napus HOM05D000848 ORTHO05D003342 1.0e-12 78.6 95 47.4
BolC9t59892H Brassica oleracea HOM05D000848 ORTHO05D033378 1.0e-12 78.6 54 59.3
BolC5t31924H Brassica oleracea HOM05D015390 ORTHO05D018553 1.3e-12 78.2 109 40.4
BraA02t08013Z Brassica rapa HOM05D000848 ORTHO05D003342 1.3e-12 78.2 64 53.1
BcaNung00302 Brassica carinata HOM05D008189 ORTHO05D012600 1.7e-12 77.8 66 53.0
BcaC02g11361 Brassica carinata HOM05D000848 ORTHO05D011438 2.2e-12 77.4 54 63.0
A03p57190 Brassica napus HOM05D000848 ORTHO05D003342 2.2e-12 77.4 83 44.6
BNapus_Darmor_BZH_scaffold_64p00140 Brassica napus HOM05D000848 ORTHO05D003342 2.2e-12 77.4 83 44.6
C06p21550 Brassica napus HOM05D000848 ORTHO05D022013 2.9e-12 77.0 105 43.8
C08p45890 Brassica napus HOM05D000848 ORTHO05D003342 2.9e-12 77.0 62 53.2
BolC2t11819H Brassica oleracea HOM05D000848 ORTHO05D015498 2.9e-12 77.0 54 61.1
BolC3t18957H Brassica oleracea HOM05D000848 ORTHO05D000007 2.9e-12 77.0 62 53.2
BolC8t51574H Brassica oleracea HOM05D000848 ORTHO05D003342 2.9e-12 77.0 62 53.2
BolC8t52141H Brassica oleracea HOM05D000848 ORTHO05D003342 2.9e-12 77.0 62 53.2
BcaB02g08198 Brassica carinata HOM05D000848 ORTHO05D003342 3.8e-12 76.6 102 42.2
A03p12850 Brassica napus HOM05D000848 ORTHO05D011438 3.8e-12 76.6 93 40.9
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 3.8e-12 76.6 54 61.1
C03p45200 Brassica napus HOM05D000848 ORTHO05D003342 3.8e-12 76.6 54 61.1
C08p40030 Brassica napus HOM05D000848 ORTHO05D003342 3.8e-12 76.6 62 53.2
C09p41410 Brassica napus HOM05D000848 ORTHO05D011438 3.8e-12 76.6 93 41.9
BolC7t46327H Brassica oleracea HOM05D000848 ORTHO05D003342 3.8e-12 76.6 54 61.1
BraA03t10593Z Brassica rapa HOM05D000848 ORTHO05D011438 3.8e-12 76.6 93 40.9
Sp7g06180 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.8e-12 76.6 88 40.9
Thhalv10019718m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 5.0e-12 76.3 142 36.6
BolC4t22620H Brassica oleracea HOM05D000848 ORTHO05D011438 6.5e-12 75.9 93 40.9
C04p56700 Brassica napus HOM05D000848 ORTHO05D003342 8.5e-12 75.5 62 58.1
BolC4t27202H Brassica oleracea HOM05D000848 ORTHO05D003342 8.5e-12 75.5 62 58.1
BolC9t57016H Brassica oleracea HOM05D000848 ORTHO05D011438 8.5e-12 75.5 93 40.9
AL6G40690 Arabidopsis lyrata HOM05D000848 ORTHO05D003342 1.1e-11 75.1 76 47.4
A02p09070 Brassica napus HOM05D000848 ORTHO05D003342 1.1e-11 75.1 54 57.4
A07p34870 Brassica napus HOM05D000848 ORTHO05D003342 1.1e-11 75.1 54 57.4
C07p42200 Brassica napus HOM05D000848 ORTHO05D003342 1.1e-11 75.1 54 57.4
C09p24120 Brassica napus HOM05D000848 ORTHO05D018553 1.1e-11 75.1 88 45.5
BraA06t24860Z Brassica rapa HOM05D000848 ORTHO05D032124 1.1e-11 75.1 54 57.4
BolC3t20476H Brassica oleracea HOM05D000848 ORTHO05D003342 2.5e-11 73.9 94 45.7
A07p37240 Brassica napus HOM05D000848 ORTHO05D003342 3.2e-11 73.6 91 39.6
C01p28500 Brassica napus HOM05D000848 ORTHO05D003342 3.2e-11 73.6 122 32.8
C01p37290 Brassica napus HOM05D000848 ORTHO05D003342 3.2e-11 73.6 91 39.6
BraA07t31284Z Brassica rapa HOM05D000848 ORTHO05D003342 3.2e-11 73.6 91 39.6
Thhalv10017861m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 4.2e-11 73.2 123 41.5
C03p85290 Brassica napus HOM05D000848 ORTHO05D003342 5.5e-11 72.8 62 50.0
C01p47370 Brassica napus HOM05D000848 ORTHO05D003342 7.2e-11 72.4 96 39.6
C02p59740 Brassica napus HOM05D000848 ORTHO05D003342 7.2e-11 72.4 96 39.6
C05p03590 Brassica napus HOM05D000848 ORTHO05D023963 7.2e-11 72.4 96 39.6
BolC5t29138H Brassica oleracea HOM05D000848 ORTHO05D003342 7.2e-11 72.4 96 39.6
C04p01170 Brassica napus HOM05D000848 ORTHO05D003342 1.6e-10 71.2 112 35.7
C05p58720 Brassica napus HOM05D000848 ORTHO05D021910 1.6e-10 71.2 85 36.5
BolC9t57644H Brassica oleracea HOM05D000848 ORTHO05D003342 1.6e-10 71.2 91 38.5
Thhalv10009948m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 1.6e-10 71.2 92 42.4
BolC3t15415H Brassica oleracea HOM05D000848 ORTHO05D003342 2.7e-10 70.5 96 39.6
BolC8t47913H Brassica oleracea HOM05D000848 ORTHO05D003342 2.7e-10 70.5 50 60.0
BcaC04g21741 Brassica carinata HOM05D008189 ORTHO05D018627 3.6e-10 70.1 53 54.7
A01p08190 Brassica napus HOM05D000848 ORTHO05D003342 3.6e-10 70.1 89 40.4
BcaC07g39283 Brassica carinata HOM05D000848 ORTHO05D003342 4.7e-10 69.7 92 43.5
BolC3t12896H Brassica oleracea HOM05D000848 ORTHO05D003342 3.0e-09 67.0 86 38.4
BolC7t45760H Brassica oleracea HOM05D000848 ORTHO05D000007 3.0e-09 67.0 46 60.9
BcaC05g25055 Brassica carinata HOM05D000848 ORTHO05D003342 3.9e-09 66.6 54 50.0
BraA05t19719Z Brassica rapa HOM05D000848 ORTHO05D003342 8.8e-09 65.5 87 37.9
C07p07060 Brassica napus HOM05D000848 ORTHO05D003342 1.1e-08 65.1 86 37.2
THA.LOC104814739 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.7e-07 61.2 72 37.5
A01p38120 Brassica napus HOM05D000848 ORTHO05D003342 2.8e-07 60.5 53 50.9
BolC1t01692H Brassica oleracea HOM05D000003 ORTHO05D000007 6.3e-07 59.3 55 41.8
BcaB07g30860 Brassica carinata HOM05D000003 ORTHO05D000007 1.1e-06 58.5 60 43.3
BolC9t58036H Brassica oleracea HOM05D000003 ORTHO05D000007 1.1e-06 58.5 77 32.5
BraA01t03255Z Brassica rapa HOM05D000003 ORTHO05D000007 1.1e-06 58.5 77 32.5
BcaB02g07776 Brassica carinata HOM05D000003 ORTHO05D000007 1.4e-06 58.2 55 43.6
AT5G28823 Arabidopsis thaliana HOM05D021876 ORTHO05D023643 1.8e-06 57.8 136 34.6
A09p40210 Brassica napus HOM05D000003 ORTHO05D000007 2.4e-06 57.4 57 38.6
BraA09t39519Z Brassica rapa HOM05D000003 ORTHO05D000007 2.4e-06 57.4 57 38.6
C06p09400 Brassica napus HOM05D000003 ORTHO05D000007 3.1e-06 57.0 64 37.5
Dinv33539 Davidia involucrata HOM05D000003 ORTHO05D000007 3.1e-06 57.0 59 40.7
THA.LOC104820715 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 4.1e-06 56.6 74 33.8
BolC6t38688H Brassica oleracea HOM05D003728 ORTHO05D000006 5.3e-06 56.2 52 40.4
BraA03t15318Z Brassica rapa HOM05D003728 ORTHO05D000007 5.3e-06 56.2 67 35.8
THA.LOC104804647 Tarenaya hassleriana HOM05D000848 ORTHO05D000007 5.3e-06 56.2 53 41.5
BcaB05g24536 Brassica carinata HOM05D000003 ORTHO05D000283 7.0e-06 55.8 65 36.9
C05p26910 Brassica napus HOM05D000003 ORTHO05D000007 7.0e-06 55.8 55 40.0
BraA05t21221Z Brassica rapa HOM05D000848 ORTHO05D000007 7.0e-06 55.8 53 45.3
BcaB06g25889 Brassica carinata HOM05D000003 ORTHO05D000007 9.1e-06 55.5 69 33.3
BcaC01g02020 Brassica carinata HOM05D000848 ORTHO05D000007 9.1e-06 55.5 80 32.5
C08p23810 Brassica napus HOM05D000848 ORTHO05D003342 9.1e-06 55.5 48 54.2
BraA07t28386Z Brassica rapa HOM05D000003 ORTHO05D000007 9.1e-06 55.5 55 41.8
Sopen04g018180 Solanum pennellii HOM05D000003 ORTHO05D000007 9.1e-06 55.5 62 41.9
Sopen10g008120 Solanum pennellii HOM05D000003 ORTHO05D000004 9.1e-06 55.5 62 41.9


User provided reference genes

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