Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 4.5e-122 441.4 248 100.0
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 9.7e-117 423.7 248 95.2
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 8.2e-116 420.6 248 94.4
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 3.5e-114 415.2 255 87.1
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 3.8e-113 411.8 248 94.4
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 3.7e-108 395.2 249 91.6
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 2.2e-105 386.0 312 69.2
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 1.2e-103 380.2 248 86.3
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 1.2e-103 380.2 246 89.4
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 1.8e-99 366.3 246 86.2
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 4.1e-99 365.2 278 77.7
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 1.7e-97 359.8 278 78.1
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 4.4e-93 345.1 278 73.7
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 3.1e-91 339.0 244 71.3
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 4.4e-85 318.5 245 72.2
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 3.7e-84 315.5 246 71.5
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 4.1e-83 312.0 245 75.1
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 9.2e-83 310.8 245 69.0
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.2e-82 310.5 246 74.8
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 4.6e-82 308.5 246 74.0
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 7.8e-82 307.8 244 75.4
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 1.3e-81 307.0 246 68.7
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.3e-81 306.2 246 69.9
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 3.0e-81 305.8 245 66.9
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 5.0e-81 305.1 249 72.7
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 8.6e-81 304.3 256 58.6
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.1e-80 303.9 245 73.1
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.5e-80 303.5 187 79.1
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.5e-80 303.5 241 68.9
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 2.5e-80 302.8 180 78.3
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 2.5e-80 302.8 177 80.2
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 2.5e-80 302.8 246 74.0
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 3.3e-80 302.4 187 75.9
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 4.3e-80 302.0 243 61.7
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 1.6e-79 300.1 243 60.5
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.6e-79 300.1 177 79.7
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 1.6e-79 300.1 241 68.5
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.6e-79 300.1 249 71.9
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 2.1e-79 299.7 180 77.8
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 2.8e-79 299.3 185 75.1
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.6e-79 298.9 247 72.5
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 4.7e-79 298.5 187 74.3
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 4.7e-79 298.5 187 75.4
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 4.7e-79 298.5 244 67.6
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 6.2e-79 298.1 243 74.5
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 8.0e-79 297.7 242 68.6
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.8e-78 296.6 277 61.7
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 1.8e-78 296.6 243 71.6
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 3.1e-78 295.8 247 71.3
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 5.2e-78 295.0 180 77.8
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 6.8e-78 294.7 247 69.6
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 8.9e-78 294.3 248 71.0
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 1.2e-77 293.9 248 71.4
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 3.4e-77 292.4 180 76.7
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 4.4e-77 292.0 184 73.9
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 9.8e-77 290.8 177 77.4
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.3e-76 290.4 184 73.4
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 2.2e-76 289.7 185 73.0
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 2.9e-76 289.3 251 65.7
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 3.7e-76 288.9 240 69.2
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.4e-76 288.1 249 63.9
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 6.4e-76 288.1 183 72.7
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 8.3e-76 287.7 179 76.5
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.4e-75 286.2 249 63.5
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 1.2e-74 283.9 185 73.0
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 6.0e-74 281.6 216 63.4
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 7.8e-74 281.2 185 71.9
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.0e-73 280.8 187 71.1
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.7e-73 280.0 168 78.0
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 5.1e-73 278.5 274 54.0
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 1.1e-72 277.3 168 76.8
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 5.6e-72 275.0 179 72.6
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.2e-71 273.9 299 55.9
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 1.2e-71 273.9 183 70.5
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 4.7e-71 271.9 170 77.1
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.2e-71 271.6 169 77.5
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.8e-70 270.0 299 50.2
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 1.8e-70 270.0 177 72.9
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 6.8e-70 268.1 247 63.2
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.1e-67 260.8 171 73.1
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 4.1e-67 258.8 212 60.8
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 1.7e-65 253.4 270 53.3
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 3.3e-64 249.2 152 77.0
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 5.6e-64 248.4 187 64.2
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 5.6e-64 248.4 145 77.2
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 4.7e-63 245.4 164 72.0
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 1.1e-62 244.2 148 75.0
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 5.2e-62 241.9 199 60.8
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 5.2e-62 241.9 192 62.0
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 8.9e-62 241.1 180 61.7
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 2.6e-61 239.6 146 75.3
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 2.9e-60 236.1 204 60.8
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 1.7e-57 226.9 285 47.0
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 2.8e-55 219.5 248 55.6
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.1e-54 217.6 255 61.6
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.2e-53 214.2 280 57.9
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 1.7e-52 210.3 356 38.2
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.7e-52 210.3 154 69.5
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.1e-51 207.6 129 76.7
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 4.3e-48 195.7 191 50.3
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.8e-47 193.0 261 42.9
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 8.1e-47 191.4 131 68.7
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 6.4e-44 181.8 168 72.0
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 4.6e-42 175.6 115 73.0
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 4.8e-39 165.6 121 89.3
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 8.1e-39 164.9 118 62.7
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 9.9e-37 157.9 113 64.6
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.2e-34 151.0 98 71.4
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 1.5e-32 144.1 81 84.0
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.6e-31 140.6 145 52.4
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 2.0e-21 107.1 107 54.2
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 4.6e-18 95.9 163 55.8
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 6.7e-17 92.0 112 47.3
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 9.7e-08 61.6 33 84.8
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 1.7e-07 60.8 40 70.0
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 4.8e-07 59.3 29 89.7
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 1.1e-06 58.2 38 68.4


User provided reference genes

Program Settings