Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 2.6e-239 831.6 417 100.0
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 9.2e-11 72.4 49 73.5
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 9.2e-11 72.4 49 73.5
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.2e-10 72.0 49 71.4
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 4.6e-10 70.1 49 71.4
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 6.0e-10 69.7 49 71.4
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 6.0e-10 69.7 49 71.4
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 6.0e-10 69.7 49 71.4
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 6.0e-10 69.7 49 71.4
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 6.0e-10 69.7 49 69.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.3e-09 68.6 84 48.8
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 3.9e-09 67.0 49 67.3
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 6.6e-09 66.2 49 67.3
BcaB02g10632 Brassica carinata HOM05D023842 ORTHO05D090943 1.1e-08 65.5 137 32.1
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.5e-08 64.3 49 61.2
BcaC05g28627 Brassica carinata HOM05D033925 ORTHO05D032173 3.3e-08 63.9 123 35.8
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.3e-08 63.9 49 61.2
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 4.3e-08 63.5 48 64.6
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 4.3e-08 63.5 48 62.5
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 4.3e-08 63.5 49 61.2
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 5.6e-08 63.2 132 33.3
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 5.6e-08 63.2 48 62.5
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 5.6e-08 63.2 49 61.2
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 7.3e-08 62.8 83 43.4
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 9.6e-08 62.4 91 41.8
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 9.6e-08 62.4 123 33.3
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 9.6e-08 62.4 48 60.4
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.2e-07 62.0 48 62.5
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-07 62.0 48 62.5
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.2e-07 62.0 49 59.2
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.6e-07 61.6 48 62.5
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.6e-07 61.6 48 62.5
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.6e-07 61.6 48 60.4
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.6e-07 61.6 93 43.0
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.1e-07 61.2 48 60.4
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.1e-07 61.2 48 60.4
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.1e-07 61.2 48 60.4
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.1e-07 61.2 49 61.2
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.1e-07 61.2 48 60.4
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.1e-07 61.2 46 65.2
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.8e-07 60.8 49 59.2
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 2.8e-07 60.8 48 60.4
BcaB04g17319 Brassica carinata HOM05D023842 ORTHO05D095757 3.6e-07 60.5 73 45.2
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 3.6e-07 60.5 51 58.8
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 3.6e-07 60.5 48 58.3
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 3.6e-07 60.5 49 59.2
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.7e-07 60.1 48 60.4
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 4.7e-07 60.1 49 57.1
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 4.7e-07 60.1 49 61.2
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 4.7e-07 60.1 49 55.1
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 4.7e-07 60.1 49 57.1
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 4.7e-07 60.1 86 41.9
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 4.7e-07 60.1 48 58.3
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 4.7e-07 60.1 48 60.4
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 6.2e-07 59.7 49 57.1
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 6.2e-07 59.7 48 60.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.2e-07 59.7 48 60.4
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 6.2e-07 59.7 49 57.1
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 6.2e-07 59.7 49 59.2
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.2e-07 59.7 51 56.9
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 6.2e-07 59.7 51 56.9
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 6.2e-07 59.7 86 41.9
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 6.2e-07 59.7 49 55.1
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 6.2e-07 59.7 53 49.1
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 58.3
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 58.3
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 58.3
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 8.1e-07 59.3 51 54.9
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 60.4
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 58.3
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 8.1e-07 59.3 52 51.9
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.1e-07 59.3 113 35.4
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 58.3
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 58.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 8.1e-07 59.3 48 58.3
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-06 58.9 48 58.3
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.1e-06 58.9 49 59.2
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.1e-06 58.9 48 56.2
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.4e-06 58.5 48 60.4
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.4e-06 58.5 48 58.3
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.4e-06 58.5 49 57.1
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.4e-06 58.5 83 42.2
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 1.8e-06 58.2 48 58.3
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.8e-06 58.2 48 58.3
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.8e-06 58.2 54 55.6
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.8e-06 58.2 49 53.1
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.8e-06 58.2 48 58.3
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.8e-06 58.2 48 58.3
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.4e-06 57.8 80 46.2
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.4e-06 57.8 48 56.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 2.4e-06 57.8 86 39.5
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.4e-06 57.8 49 55.1
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 3.1e-06 57.4 48 56.2
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 3.1e-06 57.4 48 58.3
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 4.0e-06 57.0 48 56.2
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 4.0e-06 57.0 48 54.2
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 4.0e-06 57.0 49 55.1
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 5.2e-06 56.6 47 57.4
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.2e-06 56.6 49 53.1
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 5.2e-06 56.6 48 52.1
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 5.2e-06 56.6 49 55.1
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 5.2e-06 56.6 93 39.8
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.2e-06 56.6 82 41.5
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 6.9e-06 56.2 47 57.4
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 6.9e-06 56.2 89 40.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 9.0e-06 55.8 41 63.4
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 9.0e-06 55.8 41 63.4
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 9.0e-06 55.8 48 56.2
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.0e-06 55.8 48 54.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 9.0e-06 55.8 48 56.2
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 9.0e-06 55.8 86 39.5
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 9.0e-06 55.8 70 45.7


User provided reference genes

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