Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 5.7e-87 324.3 176 100.0
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 5.7e-87 324.3 176 100.0
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 2.8e-86 322.0 176 99.4
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 3.0e-80 302.0 176 94.9
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 5.7e-71 271.2 180 85.0
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 2.4e-69 265.8 181 85.1
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 8.3e-62 240.7 178 78.7
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 4.5e-60 235.0 177 78.5
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 1.8e-56 223.0 178 72.5
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 2.6e-55 219.2 181 73.5
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 1.1e-53 213.8 182 68.7
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 1.2e-52 210.3 178 71.9
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.2e-44 183.7 187 65.2
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.3e-43 180.3 186 64.0
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 1.2e-33 147.1 127 66.1
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 8.9e-32 141.0 171 54.4
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 8.4e-30 134.4 180 51.7
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 4.1e-29 132.1 158 56.3
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 7.1e-29 131.3 154 55.2
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 7.1e-29 131.3 152 55.3
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 1.2e-28 130.6 126 61.9
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.7e-28 129.4 132 61.4
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 7.8e-28 127.9 125 61.6
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 1.0e-27 127.5 172 49.4
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 1.3e-27 127.1 182 50.0
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 1.3e-27 127.1 159 52.2
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 2.3e-27 126.3 183 48.6
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 3.9e-27 125.6 123 62.6
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 8.7e-27 124.4 178 50.0
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 1.1e-26 124.0 193 47.7
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 1.5e-26 123.6 132 55.3
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 1.5e-26 123.6 132 55.3
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 1.5e-26 123.6 132 55.3
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 2.5e-26 122.9 156 51.3
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 3.3e-26 122.5 138 55.8
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 3.3e-26 122.5 120 59.2
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 3.3e-26 122.5 156 52.6
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 4.3e-26 122.1 118 63.6
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 4.3e-26 122.1 118 63.6
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 4.3e-26 122.1 173 50.3
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 7.3e-26 121.3 120 58.3
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 9.6e-26 120.9 156 51.9
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 1.2e-25 120.6 167 51.5
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 1.2e-25 120.6 182 47.3
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 1.2e-25 120.6 124 59.7
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 1.2e-25 120.6 124 59.7
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 1.2e-25 120.6 156 51.9
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 1.2e-25 120.6 162 48.8
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 2.1e-25 119.8 113 64.6
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 2.1e-25 119.8 142 56.3
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 2.8e-25 119.4 112 67.0
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 2.8e-25 119.4 178 49.4
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 3.6e-25 119.0 125 58.4
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 4.7e-25 118.6 152 53.9
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 8.1e-25 117.9 129 56.6
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 8.1e-25 117.9 131 55.7
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 1.1e-24 117.5 166 50.6
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 1.8e-24 116.7 133 56.4
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 1.8e-24 116.7 125 56.0
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 5.2e-24 115.2 128 53.1
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 6.9e-24 114.8 159 49.1
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 6.9e-24 114.8 111 64.0
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 6.9e-24 114.8 101 65.3
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 9.0e-24 114.4 111 62.2
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 9.0e-24 114.4 164 47.6
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 2.6e-23 112.8 164 47.6
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 3.4e-23 112.5 113 61.9
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 3.4e-23 112.5 169 48.5
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 4.4e-23 112.1 91 70.3
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 5.8e-23 111.7 107 61.7
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 1.3e-22 110.5 101 66.3
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 2.9e-22 109.4 145 51.0
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 3.8e-22 109.0 97 63.9
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 3.8e-22 109.0 123 56.1
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 6.4e-22 108.2 111 57.7
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 8.4e-22 107.8 123 55.3
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 8.4e-22 107.8 134 50.0
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 1.4e-21 107.1 107 58.9
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 2.4e-21 106.3 70 78.6
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 2.4e-21 106.3 169 48.5
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 2.4e-21 106.3 88 68.2
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 9.3e-21 104.4 72 76.4
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 1.2e-20 104.0 93 64.5
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 2.7e-20 102.8 111 56.8
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 6.0e-20 101.7 130 53.1
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 1.0e-19 100.9 126 50.0
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 1.0e-19 100.9 62 82.3
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 3.0e-19 99.4 111 55.0
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 3.9e-19 99.0 99 59.6
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 5.1e-19 98.6 127 52.8
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 1.5e-18 97.1 125 56.0
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 5.6e-18 95.1 64 73.4
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 7.3e-18 94.7 113 54.0
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 1.3e-17 94.0 79 65.8
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 3.6e-17 92.4 78 69.2
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 5.3e-16 88.6 87 56.3
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 5.3e-16 88.6 60 75.0
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 9.0e-16 87.8 110 50.0
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 1.4e-13 80.5 75 60.0
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 9.3e-13 77.8 111 44.1
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 1.6e-09 67.0 94 45.7
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 2.1e-09 66.6 66 62.1
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 8.1e-09 64.7 114 42.1
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 4.0e-08 62.4 102 46.1
CBR_g18894 Chara braunii HOM05D007425 ORTHO05D009334 4.9e-06 55.5 112 34.8


User provided reference genes

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