Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 6.0e-129 464.2 231 100.0
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 8.7e-128 460.3 231 99.1
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 1.5e-127 459.5 231 98.7
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 2.0e-124 449.1 234 96.2
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 2.0e-124 449.1 234 96.2
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 3.7e-118 428.3 230 92.6
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 1.6e-113 412.9 228 90.8
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 2.7e-113 412.1 231 89.2
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 3.6e-113 411.8 231 90.0
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 6.1e-113 411.0 230 88.7
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 1.1e-111 406.8 231 88.7
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 8.0e-105 384.0 229 82.1
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 2.9e-99 365.5 224 80.4
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 8.5e-99 364.0 180 97.2
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 1.4e-93 346.7 213 80.8
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 1.2e-92 343.6 211 79.1
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 1.0e-91 340.5 211 78.2
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 1.3e-91 340.1 227 74.0
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 1.3e-91 340.1 214 76.6
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 1.3e-91 340.1 215 76.3
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 2.2e-91 339.3 212 77.8
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 2.2e-91 339.3 214 74.8
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 2.9e-91 339.0 217 74.2
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 2.9e-91 339.0 217 75.1
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 5.0e-91 338.2 212 78.3
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 5.0e-91 338.2 211 77.7
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 5.0e-91 338.2 216 75.9
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 6.5e-91 337.8 211 77.3
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 8.5e-91 337.4 210 77.6
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 8.5e-91 337.4 205 78.5
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 1.1e-90 337.0 219 74.0
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 1.1e-90 337.0 211 77.3
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 1.1e-90 337.0 210 76.2
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 1.9e-90 336.3 213 77.9
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 2.5e-90 335.9 215 76.3
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 3.2e-90 335.5 219 73.5
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 5.5e-90 334.7 227 73.1
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 7.2e-90 334.3 211 75.8
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 9.4e-90 334.0 215 73.0
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 1.6e-89 333.2 211 73.0
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 2.1e-89 332.8 211 74.4
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 2.7e-89 332.4 210 75.7
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 2.7e-89 332.4 217 74.2
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 4.7e-89 331.6 210 76.2
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 6.1e-89 331.3 216 73.1
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 6.1e-89 331.3 238 69.3
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 6.1e-89 331.3 211 74.4
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 1.4e-88 330.1 205 73.2
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 1.8e-88 329.7 211 74.4
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 3.0e-88 328.9 205 75.1
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 5.2e-88 328.2 211 74.4
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 5.2e-88 328.2 227 71.8
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 5.2e-88 328.2 227 71.8
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 5.2e-88 328.2 211 73.5
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 6.8e-88 327.8 211 73.9
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 6.8e-88 327.8 223 72.2
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 8.8e-88 327.4 227 71.4
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 2.0e-87 326.2 227 72.2
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 2.0e-87 326.2 211 72.5
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 2.6e-87 325.9 211 73.5
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 4.4e-87 325.1 227 70.9
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 9.8e-87 323.9 227 70.9
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 1.7e-86 323.2 213 73.7
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 2.2e-86 322.8 227 71.4
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 2.2e-86 322.8 201 75.1
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 2.8e-86 322.4 214 70.6
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 2.8e-86 322.4 210 72.9
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 6.3e-86 321.2 203 75.4
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 8.3e-86 320.9 211 71.6
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 4.1e-85 318.5 227 70.5
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 7.0e-85 317.8 211 73.5
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 1.2e-84 317.0 198 73.2
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 2.7e-84 315.8 215 71.2
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 1.3e-83 313.5 217 68.2
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 2.3e-83 312.8 207 71.5
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 4.7e-81 305.1 209 69.4
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 6.1e-81 304.7 200 69.0
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 1.0e-80 303.9 229 65.1
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 6.8e-80 301.2 212 67.9
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 2.2e-78 296.2 210 70.0
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 1.3e-75 287.0 178 75.3
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 2.3e-75 286.2 223 65.5
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 4.3e-74 282.0 251 57.8
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 1.6e-73 280.0 174 74.7
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 1.4e-72 276.9 168 73.2
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 1.3e-70 270.4 195 63.6
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 1.1e-66 257.3 212 61.3
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 3.6e-65 252.3 211 55.5
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 1.2e-63 247.3 155 72.3
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 4.9e-62 241.9 211 62.6
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 2.4e-61 239.6 189 55.6
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 2.1e-60 236.5 173 68.8
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 1.1e-58 230.7 214 58.9
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 2.8e-57 226.1 216 53.7
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 6.8e-56 221.5 198 52.0
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 1.2e-52 210.7 126 77.0
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 3.5e-52 209.1 139 71.2
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 5.2e-48 195.3 120 75.0
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 4.4e-47 192.2 128 78.9
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 5.8e-47 191.8 128 77.3
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 7.1e-45 184.9 148 54.1
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 5.6e-42 175.3 117 68.4
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 3.6e-41 172.6 115 70.4
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 2.9e-38 162.9 102 73.5
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 1.1e-37 161.0 201 38.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 4.9e-30 135.6 184 33.2
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 4.6e-28 129.0 166 34.9
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 8.7e-27 124.8 81 74.1
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.9e-26 123.6 100 54.0
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 3.7e-25 119.4 76 76.3
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 4.8e-25 119.0 81 72.8
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 9.9e-23 111.3 71 77.5
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 9.9e-23 111.3 74 68.9
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.3e-22 110.9 54 92.6
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 7.9e-20 101.7 59 69.5
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 1.3e-19 100.9 58 96.6
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 1.8e-11 73.9 92 52.2
BcaB01g00436 Brassica carinata HOM05D006727 ORTHO05D008408 8.7e-11 71.6 73 60.3
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 2.5e-10 70.1 54 64.8


User provided reference genes

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