Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 2.1e-73 278.9 137 100.0
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 6.0e-68 260.8 133 97.7
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 1.4e-64 249.6 128 96.1
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 3.4e-63 245.0 135 88.9
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 1.4e-48 196.4 132 68.9
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 1.8e-48 196.1 132 68.9
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 4.1e-48 194.9 132 68.2
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 4.1e-48 194.9 132 68.2
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 4.1e-48 194.9 132 68.2
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 9.0e-48 193.7 132 68.2
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 9.0e-48 193.7 132 68.2
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 9.0e-48 193.7 132 68.2
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 1.5e-47 193.0 132 67.4
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 1.5e-47 193.0 132 67.4
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 1.5e-47 193.0 132 67.4
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 2.0e-47 192.6 132 67.4
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 2.6e-47 192.2 132 67.4
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 5.9e-47 191.0 132 67.4
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 5.0e-46 188.0 132 65.9
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 2.7e-44 182.2 132 61.4
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 6.1e-44 181.0 132 63.6
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 1.8e-43 179.5 132 62.1
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 3.9e-43 178.3 132 62.1
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 5.1e-43 177.9 132 62.1
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 6.7e-43 177.6 132 62.1
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 8.8e-43 177.2 132 62.9
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.8e-43 177.2 132 62.1
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.8e-43 177.2 132 62.1
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 8.8e-43 177.2 132 62.1
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 8.8e-43 177.2 132 62.1
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 8.8e-43 177.2 132 60.6
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 1.5e-42 176.4 132 60.6
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 2.0e-42 176.0 132 60.6
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.0e-42 176.0 132 62.1
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 2.5e-42 175.6 132 59.8
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 3.3e-42 175.3 132 59.8
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 3.3e-42 175.3 132 61.4
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 4.3e-42 174.9 132 60.6
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 5.7e-42 174.5 132 59.8
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 5.7e-42 174.5 132 60.6
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 5.7e-42 174.5 132 60.6
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 5.7e-42 174.5 132 61.4
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 5.7e-42 174.5 132 59.1
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 5.7e-42 174.5 132 61.4
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 5.7e-42 174.5 130 62.3
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 7.4e-42 174.1 132 60.6
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 7.4e-42 174.1 132 59.8
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 7.4e-42 174.1 132 59.8
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 9.7e-42 173.7 132 60.6
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 9.7e-42 173.7 132 59.1
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.3e-41 173.3 132 61.4
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 1.3e-41 173.3 132 57.6
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 1.3e-41 173.3 132 57.6
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 1.7e-41 172.9 130 60.8
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 1.7e-41 172.9 132 58.3
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 1.7e-41 172.9 132 59.1
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 1.7e-41 172.9 133 61.7
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 2.2e-41 172.6 132 59.8
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 2.2e-41 172.6 130 63.1
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 2.8e-41 172.2 132 60.6
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 3.7e-41 171.8 132 59.1
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 3.7e-41 171.8 146 57.5
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 4.8e-41 171.4 132 59.8
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 4.8e-41 171.4 132 57.6
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 6.3e-41 171.0 132 59.1
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 6.3e-41 171.0 132 58.3
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 6.3e-41 171.0 132 58.3
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 6.3e-41 171.0 132 59.8
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 6.3e-41 171.0 133 58.6
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 6.3e-41 171.0 132 60.6
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 8.2e-41 170.6 132 59.1
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 1.1e-40 170.2 132 58.3
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 1.1e-40 170.2 132 60.6
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 1.1e-40 170.2 132 59.8
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 1.1e-40 170.2 132 58.3
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.4e-40 169.9 132 59.1
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.8e-40 169.5 132 59.8
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.8e-40 169.5 132 59.8
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 1.8e-40 169.5 132 59.8
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 3.1e-40 168.7 132 60.6
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 3.1e-40 168.7 133 59.4
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 3.1e-40 168.7 144 54.9
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 4.1e-40 168.3 132 59.1
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 4.1e-40 168.3 132 58.3
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.3e-40 167.9 133 58.6
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 6.9e-40 167.5 132 58.3
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 6.9e-40 167.5 132 59.1
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 6.9e-40 167.5 132 56.8
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 9.1e-40 167.2 132 59.1
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.2e-39 166.8 131 60.3
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 1.2e-39 166.8 132 56.8
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.5e-39 166.4 133 57.9
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 1.5e-39 166.4 132 57.6
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 2.0e-39 166.0 132 57.6
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 2.0e-39 166.0 132 56.8
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 2.6e-39 165.6 132 59.1
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 2.6e-39 165.6 132 56.8
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 4.5e-39 164.9 133 57.9
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 4.5e-39 164.9 133 60.2
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 7.7e-39 164.1 133 57.1
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 7.7e-39 164.1 133 59.4
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 1.0e-38 163.7 133 59.4
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 1.0e-38 163.7 133 57.1
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.8e-38 161.8 130 57.7
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 3.8e-38 161.8 133 59.4
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 2.7e-36 155.6 130 56.2
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 6.1e-36 154.5 102 67.6
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 1.8e-35 152.9 132 56.1
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 6.7e-35 151.0 130 56.2
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 8.8e-35 150.6 130 55.4
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.7e-34 147.9 166 46.4
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 4.5e-31 138.3 103 61.2
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 3.8e-30 135.2 102 60.8
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 1.9e-29 132.9 110 57.3
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 2.7e-28 129.0 138 50.0
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 6.1e-28 127.9 78 83.3
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 8.0e-28 127.5 93 61.3
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 1.0e-27 127.1 132 47.0
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 1.0e-27 127.1 132 45.5
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.4e-27 126.7 135 45.9
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 1.8e-27 126.3 131 46.6
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 8.8e-27 124.0 132 43.9
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.1e-26 123.6 130 49.2
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 1.5e-26 123.2 131 44.3
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.0e-26 122.9 93 61.3
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 2.0e-26 122.9 132 43.9
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 2.0e-26 122.9 132 43.9
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 5.7e-26 121.3 132 45.5
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.7e-25 119.8 130 43.1
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 4.1e-24 115.2 132 40.9
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 2.0e-23 112.8 132 40.2
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 3.5e-23 112.1 83 62.7
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 3.5e-23 112.1 93 53.8
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 2.9e-22 109.0 104 48.1
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 6.5e-22 107.8 103 48.5
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 2.5e-21 105.9 141 39.7
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 9.7e-18 94.0 83 53.0
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 4.8e-17 91.7 104 43.3
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.0e-15 86.3 134 36.6
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.1e-13 80.5 136 37.5
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.9e-13 79.7 128 36.7
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 5.5e-13 78.2 132 34.8
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 5.5e-13 78.2 89 41.6
BolC1t02864H Brassica oleracea HOM05D003479 ORTHO05D004659 4.0e-11 72.0 34 100.0
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 3.7e-09 65.5 87 37.9
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 3.7e-09 65.5 87 37.9
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 3.7e-09 65.5 87 37.9
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 3.1e-08 62.4 39 69.2
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.0e-07 59.7 96 38.5


User provided reference genes

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