Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 0.0e+00 1137.1 574 100.0
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 1.6e-303 1045.4 553 95.1
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 6.4e-297 1023.5 555 93.5
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.4e-275 952.6 560 87.1
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 5.8e-274 947.2 562 86.3
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 2.0e-245 852.4 558 79.4
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 3.5e-234 815.1 571 74.6
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.8e-215 752.3 558 69.7
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 3.4e-213 745.3 565 69.6
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 8.1e-199 697.6 562 66.2
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 2.0e-197 693.0 577 64.6
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 7.8e-186 654.4 581 60.9
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 1.1e-152 544.3 393 71.5
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 8.2e-143 511.5 544 52.2
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 5.2e-105 386.0 574 41.6
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 3.0e-100 370.2 592 40.2
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.4e-97 361.3 579 38.0
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.0e-97 359.8 584 38.5
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-96 358.2 586 39.1
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.2e-96 358.2 576 38.2
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 7.5e-96 355.5 572 38.3
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.3e-95 354.8 562 39.3
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 3.7e-95 353.2 569 38.3
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.4e-94 351.3 562 38.1
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 2.4e-94 350.5 561 39.0
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 3.5e-93 346.7 561 38.9
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.6e-93 346.3 566 37.8
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.9e-91 340.9 616 37.0
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.5e-91 340.5 485 40.8
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 3.3e-91 340.1 578 37.4
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 3.3e-91 340.1 581 37.3
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 3.3e-91 340.1 540 38.1
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 2.8e-90 337.0 553 38.3
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 4.7e-90 336.3 600 36.5
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 3.1e-89 333.6 586 36.9
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 5.2e-89 332.8 534 39.9
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.5e-88 331.3 559 37.9
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 2.9e-87 327.0 533 39.0
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 3.7e-87 326.6 529 39.3
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.1e-86 325.1 573 36.8
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 3.5e-85 320.1 537 37.1
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 6.0e-85 319.3 565 36.1
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 1.7e-84 317.8 566 35.9
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 8.6e-84 315.5 534 39.0
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 8.6e-84 315.5 563 37.1
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 1.1e-83 315.1 479 40.1
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.5e-83 314.7 529 37.6
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 3.3e-83 313.5 545 36.7
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 5.6e-83 312.8 490 38.4
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 6.2e-82 309.3 530 36.8
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 8.1e-82 308.9 538 36.6
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 5.2e-81 306.2 562 35.6
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 2.6e-80 303.9 535 35.9
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 5.8e-80 302.8 557 35.4
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 9.9e-80 302.0 599 34.1
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.3e-79 301.6 458 38.6
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.7e-79 301.2 527 37.6
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 2.2e-79 300.8 546 35.0
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 6.4e-79 299.3 539 35.4
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 6.4e-79 299.3 538 36.2
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 1.9e-78 297.7 595 35.5
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 5.4e-78 296.2 558 36.0
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 5.4e-78 296.2 560 34.5
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 2.3e-76 290.8 482 36.5
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 3.9e-76 290.0 561 34.9
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.1e-75 288.5 572 35.7
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.9e-75 287.7 571 33.6
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 4.3e-75 286.6 540 35.6
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 9.6e-75 285.4 569 33.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 1.6e-74 284.6 561 33.9
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 1.4e-73 281.6 531 34.3
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 2.4e-73 280.8 555 33.7
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 4.0e-73 280.0 465 35.7
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 9.0e-73 278.9 406 38.9
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 2.2e-71 274.2 548 33.6
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.4e-70 270.8 579 33.2
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.5e-67 260.8 475 34.5
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 9.6e-67 258.8 519 33.1
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 3.6e-66 256.9 513 34.1
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 1.5e-64 251.5 546 34.2
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 9.9e-64 248.8 614 31.6
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.9e-62 244.6 531 31.5
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.9e-62 244.6 531 31.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.1e-57 227.3 445 32.8
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 2.4e-54 217.6 534 32.8
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 5.5e-54 216.5 382 34.6
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.7e-53 214.2 534 31.5
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 2.3e-52 211.1 547 29.4
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.1e-51 208.8 547 29.6
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.9e-51 208.0 558 29.0
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 1.2e-48 198.7 311 38.3
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.5e-48 198.4 304 37.8
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.4e-46 191.8 576 28.1
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.9e-46 191.4 245 42.9
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 1.9e-46 191.4 546 27.3
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 3.2e-46 190.7 540 28.1
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 6.7e-44 183.0 555 30.5
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 6.5e-39 166.4 257 39.3
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.7e-34 151.8 322 34.5
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 1.8e-33 148.3 316 33.5
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 5.7e-19 100.1 159 39.0
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.8e-18 97.8 87 59.8
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 5.9e-16 90.1 96 55.2
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.5e-14 85.5 242 27.7
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 7.5e-11 73.2 366 24.9
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.1e-09 69.3 214 29.4
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 7.0e-09 66.6 289 25.6
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 9.1e-09 66.2 212 30.7
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 6.5e-07 60.1 152 30.9
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.1e-06 59.3 137 29.2
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.1e-06 59.3 66 45.5


User provided reference genes

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