Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50002 Brassica carinata HOM05D040588 ORTHO05D032098 4.4e-109 397.9 193 100.0
BcaC09g50001 Brassica carinata HOM05D040588 ORTHO05D032098 2.9e-100 368.6 180 98.9
Sp1g24270 Schrenkiella parvula HOM05D002085 ORTHO05D002103 3.7e-23 112.5 76 75.0
Thhalv10007307m.g Eutrema salsugineum HOM05D002085 ORTHO05D002103 5.4e-22 108.6 76 72.4
BcaC05g26812 Brassica carinata HOM05D002085 ORTHO05D002103 1.6e-21 107.1 75 73.3
A09p37970 Brassica napus HOM05D002085 ORTHO05D002103 1.6e-21 107.1 75 72.0
BraA09t39309Z Brassica rapa HOM05D002085 ORTHO05D002103 1.6e-21 107.1 75 72.0
Carub.0001s2652 Capsella rubella HOM05D002085 ORTHO05D002103 2.0e-21 106.7 77 71.4
BcaC05g26628 Brassica carinata HOM05D002085 ORTHO05D002103 6.0e-21 105.1 75 70.7
C05p26790 Brassica napus HOM05D002085 ORTHO05D002103 6.0e-21 105.1 75 70.7
BolC5t31400H Brassica oleracea HOM05D002085 ORTHO05D002103 6.0e-21 105.1 75 70.7
AT1G28090 Arabidopsis thaliana HOM05D002085 ORTHO05D002103 1.3e-20 104.0 77 70.1
CARHR027550 Cardamine hirsuta HOM05D002085 ORTHO05D002103 2.3e-20 103.2 77 68.8
AL1G41610 Arabidopsis lyrata HOM05D002085 ORTHO05D002103 1.5e-19 100.5 77 67.5
C01p30140 Brassica napus HOM05D040588 ORTHO05D032098 1.4e-17 94.0 48 95.8
BcaC05g25609 Brassica carinata HOM05D000675 ORTHO05D021717 1.3e-15 87.4 142 35.9
A04p09980 Brassica napus HOM05D000675 ORTHO05D021717 1.9e-14 83.6 61 57.4
BraA04t16659Z Brassica rapa HOM05D000675 ORTHO05D021717 1.9e-14 83.6 61 57.4
THA.LOC104812601 Tarenaya hassleriana HOM05D002085 ORTHO05D002103 2.7e-13 79.7 76 52.6
C06p13550 Brassica napus HOM05D000675 ORTHO05D032205 1.2e-08 64.3 61 47.5
BolC6t36519H Brassica oleracea HOM05D000675 ORTHO05D032205 1.2e-08 64.3 61 47.5
BcaB03g15207 Brassica carinata HOM05D000675 ORTHO05D000395 2.0e-08 63.5 67 47.8
C06p46010 Brassica napus HOM05D000675 ORTHO05D000395 2.6e-08 63.2 136 33.1
BolC3t17251H Brassica oleracea HOM05D000675 ORTHO05D000395 2.6e-08 63.2 136 33.1
BcaC02g11195 Brassica carinata HOM05D000675 ORTHO05D000395 3.4e-08 62.8 67 52.2
C04p19400 Brassica napus HOM05D000675 ORTHO05D000395 3.4e-08 62.8 67 52.2
BraA10t43278Z Brassica rapa HOM05D000675 ORTHO05D000395 3.4e-08 62.8 136 30.9
BcaB04g20306 Brassica carinata HOM05D000675 ORTHO05D000395 4.4e-08 62.4 52 55.8
C01p30130 Brassica napus HOM05D000675 ORTHO05D018767 4.9e-07 58.9 24 100.0
BolC1t02958H Brassica oleracea HOM05D000675 ORTHO05D018767 4.9e-07 58.9 24 100.0
BcaC09g49264 Brassica carinata HOM05D000675 ORTHO05D000395 1.4e-06 57.4 89 41.6
C04p65980 Brassica napus HOM05D000675 ORTHO05D000395 1.4e-06 57.4 67 44.8
BcaC01g02919 Brassica carinata HOM05D000675 ORTHO05D000395 1.9e-06 57.0 61 49.2
BcaC01g03691 Brassica carinata HOM05D000675 ORTHO05D000395 2.4e-06 56.6 67 43.3
BraA02t08414Z Brassica rapa HOM05D000675 ORTHO05D018767 2.4e-06 56.6 24 95.8
BcaC03g14557 Brassica carinata HOM05D000675 ORTHO05D000395 3.2e-06 56.2 61 47.5
BolC1t04031H Brassica oleracea HOM05D000675 ORTHO05D000395 5.4e-06 55.5 89 40.4
A07p03370 Brassica napus HOM05D000675 ORTHO05D000395 7.1e-06 55.1 67 41.8
A09p51440 Brassica napus HOM05D000675 ORTHO05D000395 7.1e-06 55.1 67 41.8
A01p19470 Brassica napus HOM05D000675 ORTHO05D021814 9.2e-06 54.7 75 38.7
BolC4t28102H Brassica oleracea HOM05D000675 ORTHO05D000395 9.2e-06 54.7 67 43.3


User provided reference genes

Program Settings