Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 7.2e-80 300.4 143 100.0
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 7.2e-80 300.4 143 100.0
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 3.3e-77 291.6 143 97.9
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 3.3e-77 291.6 143 97.9
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 7.4e-69 263.8 147 87.8
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 2.2e-68 262.3 147 86.4
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.8e-68 261.9 148 87.8
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.2e-66 256.5 148 84.5
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.0e-66 255.8 147 85.7
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 2.6e-66 255.4 147 85.0
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 2.1e-63 245.7 132 87.1
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.7e-63 245.4 148 83.1
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 8.0e-63 243.8 148 83.1
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.8e-62 242.7 149 82.6
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.3e-62 242.3 151 82.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 3.0e-62 241.9 149 82.6
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 3.0e-62 241.9 149 81.9
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 3.9e-62 241.5 147 80.3
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.3e-61 238.4 148 82.4
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.8e-60 235.3 137 83.9
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 3.7e-60 235.0 147 76.2
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.1e-59 233.4 149 81.9
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.1e-59 231.9 148 77.0
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 4.1e-59 231.5 148 77.0
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 9.1e-59 230.3 147 78.9
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.2e-58 229.9 147 74.8
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.2e-58 229.9 147 74.8
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 76.4
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 75.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.2e-58 229.9 147 74.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.2e-58 229.9 147 75.5
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 3.5e-58 228.4 147 74.1
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 4.5e-58 228.0 147 74.1
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 4.5e-58 228.0 149 75.8
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 5.9e-58 227.6 148 82.4
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 5.9e-58 227.6 151 78.1
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 5.9e-58 227.6 151 78.1
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.9e-58 227.6 148 74.3
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 5.9e-58 227.6 135 80.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 5.9e-58 227.6 147 72.8
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.7e-57 226.1 150 78.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.2e-57 225.7 147 73.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.2e-57 225.7 148 75.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.5e-57 224.2 147 72.8
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.5e-57 223.8 147 73.5
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 8.5e-57 223.8 147 73.5
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 8.5e-57 223.8 147 72.8
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 8.5e-57 223.8 147 72.1
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 72.1
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.9e-56 222.6 147 74.1
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-56 222.6 147 71.4
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.5e-56 222.2 147 72.1
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 3.2e-56 221.9 147 74.8
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 5.5e-56 221.1 151 78.1
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 5.5e-56 221.1 151 78.1
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 5.5e-56 221.1 151 78.1
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 5.5e-56 221.1 147 72.1
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 5.5e-56 221.1 151 72.2
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 5.5e-56 221.1 147 72.1
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.2e-56 220.7 148 73.0
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 7.2e-56 220.7 148 73.0
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 7.2e-56 220.7 147 70.7
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 7.2e-56 220.7 147 70.7
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 7.2e-56 220.7 147 70.7
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 7.2e-56 220.7 147 70.7
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 7.2e-56 220.7 149 73.8
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.4e-56 220.3 147 72.1
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 9.4e-56 220.3 147 72.1
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.2e-55 219.9 148 70.3
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-55 219.9 147 72.1
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.6e-55 219.5 147 71.4
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 2.1e-55 219.2 151 76.8
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 2.7e-55 218.8 149 78.5
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-55 218.8 149 78.5
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 2.7e-55 218.8 149 78.5
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.7e-55 218.8 149 71.8
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 2.7e-55 218.8 144 70.8
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 3.6e-55 218.4 151 77.5
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 4.7e-55 218.0 151 77.5
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 6.1e-55 217.6 149 73.8
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 8.0e-55 217.2 146 69.9
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.4e-54 216.5 147 72.8
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 4.0e-54 214.9 136 71.3
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 4.0e-54 214.9 152 73.0
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 4.0e-54 214.9 147 70.7
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 5.2e-54 214.5 148 70.9
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 6.7e-54 214.2 147 68.7
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.7e-54 214.2 147 69.4
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 6.7e-54 214.2 147 70.7
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.5e-53 213.0 149 71.8
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.0e-53 212.6 147 70.1
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 2.0e-53 212.6 147 70.7
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.6e-53 212.2 151 72.2
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.6e-53 212.2 146 68.5
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.6e-53 212.2 147 70.7
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.3e-53 211.8 136 70.6
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.4e-53 211.5 147 69.4
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.4e-53 211.5 147 69.4
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.7e-53 211.1 147 70.1
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 5.7e-53 211.1 148 70.9
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 7.5e-53 210.7 148 73.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 9.7e-53 210.3 147 68.7
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 9.7e-53 210.3 148 70.9
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 9.7e-53 210.3 148 70.9
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.3e-52 209.9 136 69.9
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.2e-52 209.1 137 70.1
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.2e-52 209.1 149 71.1
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.8e-52 208.8 147 70.1
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.8e-52 208.8 138 72.5
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 3.7e-52 208.4 147 68.7
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.8e-52 208.0 149 69.1
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 4.8e-52 208.0 146 69.2
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 6.3e-52 207.6 148 68.9
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 8.2e-52 207.2 145 68.3
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 8.2e-52 207.2 147 67.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 8.2e-52 207.2 149 69.8
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 8.2e-52 207.2 147 68.0
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.1e-51 206.8 147 68.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.4e-51 206.5 147 68.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.4e-51 206.5 148 68.9
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.8e-51 206.1 147 68.0
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 3.1e-51 205.3 147 68.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 7.0e-51 204.1 147 69.4
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 129 76.7
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.7e-50 202.2 133 75.2
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.7e-50 202.2 133 75.2
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.7e-50 202.2 151 66.9
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.9e-50 201.1 133 74.4
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.7e-49 199.5 148 63.5
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.8e-49 198.4 136 67.6
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.8e-49 198.4 141 68.8
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.2e-48 195.3 117 74.4
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 5.5e-48 194.5 147 61.9
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 2.7e-47 192.2 101 89.1
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 3.6e-47 191.8 126 73.8
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 4.7e-47 191.4 150 64.7
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.0e-46 190.3 147 64.6
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 8.8e-46 187.2 147 61.2
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.5e-45 186.4 129 72.9
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.7e-42 175.6 147 61.9
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 5.9e-42 174.5 147 61.9
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 3.3e-40 168.7 135 63.0
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.6e-39 166.4 124 67.7
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 5.2e-38 161.4 101 72.3
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.8e-35 152.9 147 58.5
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.5e-34 148.3 96 72.9
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.5e-32 143.3 142 51.4
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.3e-32 142.1 97 71.1
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 5.6e-32 141.4 147 53.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 8.9e-30 134.0 127 55.1
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.7e-23 111.7 140 44.3
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 8.9e-22 107.5 128 54.7
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 9.2e-19 97.4 67 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.1e-18 96.3 94 48.9
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.3e-17 92.8 75 62.7
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 3.9e-09 65.5 85 38.8


User provided reference genes

Program Settings