Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.3e-165 585.5 293 100.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.3e-165 585.5 293 100.0
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 3.3e-164 581.6 293 99.7
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 1.5e-161 572.8 293 98.0
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.4e-159 566.2 293 96.6
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 3.9e-141 505.0 302 85.8
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.6e-139 499.6 301 84.7
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.3e-136 490.0 302 83.8
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 5.0e-136 488.0 302 84.1
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.1e-135 486.9 302 83.4
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 8.5e-104 380.9 292 68.8
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 9.1e-98 360.9 316 62.0
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.6e-73 280.4 300 51.3
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 5.1e-72 275.4 300 49.0
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 3.3e-71 272.7 309 49.5
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 4.3e-71 272.3 306 50.7
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.6e-70 269.2 300 50.0
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 6.8e-69 265.0 300 49.3
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.3e-67 260.8 296 48.3
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 1.4e-66 257.3 300 46.7
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.4e-66 257.3 300 46.3
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 3.2e-66 256.1 300 46.7
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 4.1e-66 255.8 304 44.7
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 5.4e-66 255.4 300 47.3
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-65 253.8 304 44.7
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-65 253.8 304 44.7
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.6e-65 253.8 304 47.4
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.7e-65 253.1 305 48.9
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 6.0e-65 251.9 305 48.2
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 1.3e-64 250.8 305 46.6
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.7e-64 250.4 300 48.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-64 250.0 304 44.4
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-64 250.0 304 44.4
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.3e-64 250.0 301 47.5
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.3e-64 250.0 308 47.1
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 3.9e-64 249.2 308 45.8
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 6.6e-64 248.4 300 48.0
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.1e-63 247.7 302 49.0
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.1e-63 247.7 304 47.4
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.5e-63 247.3 300 48.0
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.9e-63 246.9 299 48.8
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 3.3e-63 246.1 301 47.8
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.3e-63 245.7 300 47.7
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 4.3e-63 245.7 305 47.5
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 4.3e-63 245.7 309 45.0
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 5.6e-63 245.4 308 45.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.2e-62 244.2 297 47.1
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.5e-60 237.3 295 47.8
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 7.6e-60 235.0 293 43.7
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.9e-59 233.0 301 44.5
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 3.8e-59 232.6 295 47.1
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 4.9e-59 232.3 295 46.4
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 6.4e-59 231.9 300 44.3
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.1e-58 231.1 300 46.0
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.6e-57 227.3 305 43.3
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.7e-57 226.5 300 46.0
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 7.8e-57 224.9 301 42.9
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.3e-56 224.2 301 43.9
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 2.3e-56 223.4 306 44.8
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 3.9e-56 222.6 274 47.1
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 5.6e-55 218.8 301 44.2
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.3e-54 217.6 300 46.0
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 4.8e-54 215.7 298 42.3
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.4e-53 214.2 298 41.9
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.4e-53 213.4 297 41.4
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 5.3e-53 212.2 301 41.5
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 3.8e-51 206.1 300 42.0
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 6.0e-49 198.7 301 42.2
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.0e-48 198.0 305 40.3
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.3e-48 197.6 301 42.5
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 3.9e-48 196.1 300 43.0
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.1e-47 194.5 302 40.1
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.5e-47 194.1 298 41.3
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.3e-46 191.0 305 40.7
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 1.8e-45 187.2 299 39.5
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.3e-45 185.7 305 38.7
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.2e-44 184.5 301 38.9
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 8.4e-43 178.3 306 37.6
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 1.1e-42 177.9 292 40.4
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.2e-41 174.5 298 38.9
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.6e-41 174.1 274 40.1
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.6e-41 172.6 298 38.6
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 6.0e-41 172.2 296 37.5
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.0e-40 171.4 298 38.3
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.3e-40 171.0 305 39.3
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 3.9e-40 169.5 289 39.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 3.3e-39 166.4 297 35.7
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.6e-38 164.1 249 40.2
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 3.7e-38 162.9 303 38.3
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.8e-37 160.6 238 42.9
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 1.8e-37 160.6 303 36.3
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.7e-33 146.7 139 57.6
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 7.4e-31 138.7 217 40.6
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 6.2e-30 135.6 228 40.4
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 5.3e-29 132.5 302 33.1
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-27 127.9 253 36.8
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 3.2e-26 123.2 273 34.4
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 7.1e-26 122.1 141 46.1
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.5e-23 114.4 310 32.6
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 2.2e-22 110.5 223 34.1
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.8e-21 107.5 271 32.5
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 5.9e-20 102.4 259 33.6
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 6.5e-19 99.0 223 32.7
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 6.5e-19 99.0 85 61.2
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 3.9e-16 89.7 157 35.0
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.1e-15 88.2 166 37.3
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.5e-15 87.8 164 32.9
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.7e-11 74.3 68 52.9
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.1e-10 71.6 140 38.6
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 2.5e-10 70.5 142 33.8


User provided reference genes

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