Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49941 Brassica carinata HOM05D013025 ORTHO05D014087 2.7e-61 238.4 115 100.0
BcaC01g01038 Brassica carinata HOM05D013025 ORTHO05D014087 7.6e-32 140.6 76 90.8
BcaC01g01037 Brassica carinata HOM05D013025 ORTHO05D014087 4.5e-24 114.8 62 88.7
C01p30970 Brassica napus HOM05D013025 ORTHO05D014087 1.4e-22 109.8 57 93.0
BolC1t03031H Brassica oleracea HOM05D013025 ORTHO05D014087 1.4e-22 109.8 57 93.0
C08p37100 Brassica napus HOM05D013025 ORTHO05D014087 2.5e-22 109.0 57 91.2
BolC8t51288H Brassica oleracea HOM05D013025 ORTHO05D014087 2.1e-21 105.9 57 89.5
Thhalv10016961m.g Eutrema salsugineum HOM05D001823 ORTHO05D001909 1.3e-20 103.2 101 58.4
Sp4g25250 Schrenkiella parvula HOM05D001823 ORTHO05D001909 1.8e-20 102.8 125 52.0
BcaNung03541 Brassica carinata HOM05D001823 ORTHO05D001909 3.9e-20 101.7 101 58.4
BcaC01g05261 Brassica carinata HOM05D001823 ORTHO05D001909 5.1e-20 101.3 105 56.2
CARHR138190 Cardamine hirsuta HOM05D001823 ORTHO05D001909 5.1e-20 101.3 101 56.4
BolC2t07170H Brassica oleracea HOM05D013025 ORTHO05D014087 6.7e-20 100.9 53 90.6
Carub.0004s2560 Capsella rubella HOM05D001823 ORTHO05D001909 1.5e-19 99.8 101 56.4
BcaC02g12412 Brassica carinata HOM05D001823 ORTHO05D001909 1.9e-19 99.4 101 57.4
C04p04210 Brassica napus HOM05D001823 ORTHO05D001909 1.9e-19 99.4 101 57.4
BolC4t22058H Brassica oleracea HOM05D001823 ORTHO05D001909 1.9e-19 99.4 101 57.4
AL4G41780 Arabidopsis lyrata HOM05D001823 ORTHO05D001909 3.3e-19 98.6 101 56.4
BcaC03g14947 Brassica carinata HOM05D001823 ORTHO05D014087 3.3e-19 98.6 94 59.6
A03p23990 Brassica napus HOM05D001823 ORTHO05D001909 5.7e-19 97.8 101 56.4
BraA03t11611Z Brassica rapa HOM05D001823 ORTHO05D001909 5.7e-19 97.8 101 56.4
C03p28600 Brassica napus HOM05D001823 ORTHO05D001909 7.4e-19 97.4 101 56.4
BolC3t15224H Brassica oleracea HOM05D001823 ORTHO05D001909 7.4e-19 97.4 101 56.4
A05p03610 Brassica napus HOM05D001823 ORTHO05D001909 9.7e-19 97.1 101 56.4
BraA05t19347Z Brassica rapa HOM05D001823 ORTHO05D001909 9.7e-19 97.1 101 56.4
AT2G43120 Arabidopsis thaliana HOM05D001823 ORTHO05D001909 3.7e-18 95.1 101 53.5
A02p29520 Brassica napus HOM05D013025 ORTHO05D014087 2.4e-17 92.4 75 62.7
BraA02t07978Z Brassica rapa HOM05D013025 ORTHO05D014087 2.4e-17 92.4 75 62.7
BolC2t08558H Brassica oleracea HOM05D013025 ORTHO05D014087 5.3e-17 91.3 57 77.2
C02p24600 Brassica napus HOM05D013025 ORTHO05D014087 9.0e-17 90.5 57 77.2
BcaB06g25634 Brassica carinata HOM05D013025 ORTHO05D014087 1.5e-16 89.7 66 66.7
BcaC07g42472 Brassica carinata HOM05D001823 ORTHO05D014087 4.5e-16 88.2 101 52.5
Aa31LG1G24930 Aethionema arabicum HOM05D001823 ORTHO05D001909 4.2e-14 81.6 99 45.5
THA.LOC104803495 Tarenaya hassleriana HOM05D001823 ORTHO05D001909 4.6e-13 78.2 97 45.4
THA.LOC104802291 Tarenaya hassleriana HOM05D001823 ORTHO05D001909 7.9e-13 77.4 104 46.2
EL10Ac5g11610 Beta vulgaris HOM05D001823 ORTHO05D001909 1.4e-12 76.6 104 43.3
AUR62037111 Chenopodium quinoa HOM05D001823 ORTHO05D001909 1.8e-12 76.3 104 43.3
Oeu053850.1 Olea europaea HOM05D001823 ORTHO05D001909 2.3e-12 75.9 104 43.3
Carub.0005s2594 Capsella rubella HOM05D001823 ORTHO05D001909 1.1e-11 73.6 101 45.5
AUR62042876 Chenopodium quinoa HOM05D001823 ORTHO05D001909 1.5e-11 73.2 104 43.3
HanXRQChr17g0546191 Helianthus annuus HOM05D001823 ORTHO05D001909 3.3e-11 72.0 113 38.9
Oeu034480.1 Olea europaea HOM05D001823 ORTHO05D001909 7.4e-11 70.9 104 41.3
CiPaw.01G107100 Carya illinoinensis HOM05D001823 ORTHO05D001909 1.7e-10 69.7 104 39.4
MSTRG.24607 Avicennia marina HOM05D001823 ORTHO05D001909 3.7e-10 68.6 104 41.3
Duzib213G1003 Durio zibethinus HOM05D001823 ORTHO05D001909 4.8e-10 68.2 104 38.5
Peaxi162Scf00286g00444 Petunia axillaris HOM05D001823 ORTHO05D001909 6.3e-10 67.8 100 42.0
SalBow3G2654 Salvia bowleyana HOM05D001823 ORTHO05D001909 6.3e-10 67.8 100 42.0
SalBow3G2782 Salvia bowleyana HOM05D001823 ORTHO05D001909 6.3e-10 67.8 100 42.0
CAN.G710.33 Capsicum annuum HOM05D001823 ORTHO05D001909 1.1e-09 67.0 104 39.4
CiPaw.01G107300 Carya illinoinensis HOM05D001823 ORTHO05D001909 1.1e-09 67.0 104 39.4
BcaC07g40465 Brassica carinata HOM05D001823 ORTHO05D001909 1.4e-09 66.6 122 37.7
CAN.G710.35 Capsicum annuum HOM05D001823 ORTHO05D001909 1.4e-09 66.6 104 40.4
TAR362G0674 Trochodendron aralioides HOM05D001823 ORTHO05D001909 1.4e-09 66.6 104 40.4
CiPaw.01G107400 Carya illinoinensis HOM05D001823 ORTHO05D001909 1.8e-09 66.2 104 38.5
Lsat_1_v5_gn_3_111920 Lactuca sativa HOM05D001823 ORTHO05D001909 1.8e-09 66.2 99 40.4
Nitab4.5_0006630g0020 Nicotiana tabacum HOM05D001823 ORTHO05D001909 1.8e-09 66.2 104 40.4
Psat6g142920 Pisum sativum HOM05D001823 ORTHO05D001909 1.8e-09 66.2 100 38.0
SMO337G0068 Selaginella moellendorffii HOM05D001823 ORTHO05D001909 1.8e-09 66.2 99 40.4
Solyc09g098180.4 Solanum lycopersicum HOM05D001823 ORTHO05D001909 1.8e-09 66.2 104 40.4
Sopen09g036130 Solanum pennellii HOM05D001823 ORTHO05D001909 1.8e-09 66.2 104 40.4
CANSAT78G0965 Cannabis sativa HOM05D001823 ORTHO05D001909 4.1e-09 65.1 100 36.0
Cc03_g10350 Coffea canephora HOM05D001823 ORTHO05D001909 4.1e-09 65.1 104 38.5
COL.COLO4_09761 Corchorus olitorius HOM05D001823 ORTHO05D001909 4.1e-09 65.1 104 37.5
PGSC0003DMG400011910 Solanum tuberosum HOM05D001823 ORTHO05D001909 4.1e-09 65.1 104 40.4
ClCG07G016710 Citrullus lanatus HOM05D001823 ORTHO05D001909 5.3e-09 64.7 100 38.0
CsaV3_4G003840 Cucumis sativus L. HOM05D001823 ORTHO05D001909 5.3e-09 64.7 100 38.0
Glyma.18G300500 Glycine max HOM05D001823 ORTHO05D001909 5.3e-09 64.7 123 35.0
Sc16g0003520 Simmondsia chinensis HOM05D001823 ORTHO05D001909 5.3e-09 64.7 104 36.5
MELO3C017671.2 Cucumis melo HOM05D001823 ORTHO05D001909 6.9e-09 64.3 100 38.0
Duzib268G0131 Durio zibethinus HOM05D001823 ORTHO05D001909 6.9e-09 64.3 104 37.5
Duzib268G0348 Durio zibethinus HOM05D001823 ORTHO05D001909 6.9e-09 64.3 104 37.5
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 6.9e-09 64.3 98 35.7
Nitab4.5_0004200g0090 Nicotiana tabacum HOM05D001823 ORTHO05D001909 9.1e-09 63.9 104 39.4
Thecc.07G024400 Theobroma cacao HOM05D001823 ORTHO05D001909 9.1e-09 63.9 104 37.5
Nitab4.5_0006630g0040 Nicotiana tabacum HOM05D001823 ORTHO05D001909 1.2e-08 63.5 104 37.5
Lj1g0004893 Lotus japonicus HOM05D001823 ORTHO05D001909 1.5e-08 63.2 122 35.2
PGR083G1523 Punica granatum HOM05D001823 ORTHO05D001909 1.5e-08 63.2 104 38.5
Peaxi162Scf00286g00440 Petunia axillaris HOM05D001823 ORTHO05D001909 2.0e-08 62.8 104 37.5
arahy.Tifrunner.gnm1.ann1.1Y86Y0 Arachis hypogaea HOM05D001823 ORTHO05D001909 2.6e-08 62.4 123 34.1
arahy.Tifrunner.gnm1.ann1.V9H137 Arachis hypogaea HOM05D001823 ORTHO05D001909 2.6e-08 62.4 123 34.1
Gohir.A04G010300 Gossypium hirsutum HOM05D001823 ORTHO05D001909 2.6e-08 62.4 103 34.0
unitig_578.g16340 Utricularia gibba HOM05D001823 ORTHO05D001909 2.6e-08 62.4 104 36.5
DCAR_004838 Daucus carota HOM05D001823 ORTHO05D001909 3.4e-08 62.0 104 37.5
Lalb_Chr06g0164611 Lupinus albus HOM05D001823 ORTHO05D001909 3.4e-08 62.0 95 38.9
Solyc09g098160.3 Solanum lycopersicum HOM05D001823 ORTHO05D001909 3.4e-08 62.0 104 37.5
Sopen09g036110 Solanum pennellii HOM05D001823 ORTHO05D001909 3.4e-08 62.0 104 37.5
Gohir.D01G072100 Gossypium hirsutum HOM05D001823 ORTHO05D001909 4.5e-08 61.6 104 37.5
Gohir.D05G377700 Gossypium hirsutum HOM05D001823 ORTHO05D001909 4.5e-08 61.6 103 34.0
Gorai.002G095100 Gossypium raimondii HOM05D001823 ORTHO05D001909 4.5e-08 61.6 104 37.5
Gorai.009G445500 Gossypium raimondii HOM05D001823 ORTHO05D001909 4.5e-08 61.6 103 34.0
Os03g0845000 Oryza sativa ssp. japonica HOM05D001823 ORTHO05D001909 4.5e-08 61.6 104 36.5
CSS0010248 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 5.9e-08 61.2 105 36.2
CSS0024421 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 7.7e-08 60.8 104 36.5
CSS0043943 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 7.7e-08 60.8 104 36.5
Gohir.A01G085800 Gossypium hirsutum HOM05D001823 ORTHO05D001909 1.0e-07 60.5 104 36.5
FAN07G2900 Fragaria x ananassa HOM05D001823 ORTHO05D001909 1.3e-07 60.1 103 36.9
PSO541G4941 Papaver somniferum HOM05D001823 ORTHO05D001909 1.3e-07 60.1 104 36.5
PSO675G3791 Papaver somniferum HOM05D001823 ORTHO05D001909 1.3e-07 60.1 104 36.5
Sc07g0007100 Simmondsia chinensis HOM05D001823 ORTHO05D001909 1.3e-07 60.1 101 35.6
SEGI_02799 Sequoiadendron giganteum HOM05D001823 ORTHO05D001909 2.2e-07 59.3 96 37.5
Cpa.g.sc12.210 Carica papaya HOM05D001823 ORTHO05D001909 2.9e-07 58.9 104 36.5
Pp3c2_10320 Physcomitrium patens HOM05D001823 ORTHO05D001909 2.9e-07 58.9 104 36.5
Aqoxy1G04043 Aquilegia oxysepala HOM05D001823 ORTHO05D001909 3.8e-07 58.5 104 32.7
SEGI_27635 Sequoiadendron giganteum HOM05D001823 ORTHO05D001909 3.8e-07 58.5 99 36.4
SEGI_28243 Sequoiadendron giganteum HOM05D001823 ORTHO05D001909 3.8e-07 58.5 99 36.4
CDE02G0630 Ceratophyllum demersum HOM05D001823 ORTHO05D001909 5.0e-07 58.2 102 33.3
CSS0010018 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 6.5e-07 57.8 104 33.7
SEGI_11265 Sequoiadendron giganteum HOM05D001823 ORTHO05D001909 8.5e-07 57.4 96 37.5
VMungo0540G1418 Vigna mungo HOM05D001823 ORTHO05D001909 8.5e-07 57.4 99 33.3
MSTRG.6972 Avicennia marina HOM05D001823 ORTHO05D001909 1.1e-06 57.0 100 36.0
Hund10616 Selenicereus undatus HOM05D001823 ORTHO05D001909 1.1e-06 57.0 104 36.5
TAR626G1148 Trochodendron aralioides HOM05D001823 ORTHO05D001909 1.1e-06 57.0 104 33.7
Oeu034545.1 Olea europaea HOM05D001823 ORTHO05D001909 1.4e-06 56.6 96 32.3
Oeu034546.1 Olea europaea HOM05D001823 ORTHO05D001909 1.4e-06 56.6 96 32.3
CSS0004218 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 3.2e-06 55.5 104 32.7
TPR.G30655 Trifolium pratense HOM05D001823 ORTHO05D001909 3.2e-06 55.5 100 34.0
SHI26550 Sapria himalayana HOM05D001823 ORTHO05D001909 4.2e-06 55.1 96 36.5
Mapoly0134s0025 Marchantia polymorpha HOM05D001823 ORTHO05D001909 7.2e-06 54.3 104 35.6
TAR626G1867 Trochodendron aralioides HOM05D001823 ORTHO05D001909 9.4e-06 53.9 104 31.7


User provided reference genes

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